Browse entries in the PDBbind-CN Database

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Related entries of code: 1dqx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3gdtRCSB PDB    PDBbind267aa, >3GDT_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1jjkRCSB PDB    PDBbindBMP
1lorRCSB PDB    PDBbindBMP
1x1zRCSB PDB    PDBbindBMP

Entry Information
PDB ID1dqx
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameorotidine 5'-monophosphate decarboxylase
Ligand NameBMP
EC.Number E.C.4.1.1.23
Resolution 2.4(Å)
Affinity (Kd/Ki/IC50)Ki=9pM
Release Year2000
Protein/NA SequenceCheck fasta file
Primary Reference Proc.Natl.Acad.Sci.USA v97 pp. 2011-6, 2000
Ligand Properties
Formula C9H14N2O10P
Molecular Weight 341.189
Exact Mass 341.039
No. of atoms 36
No. of bonds 37
Polar Surface Area 208.29
LOGP Value -4.26      (Computed with XLOGP3)
-3.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P03962  
Entrez Gene IDNCBI Entrez Gene ID: 856692  
ASDInformation of known allosteric effects of PDB entries

 
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