Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1fm9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1n4hRCSB PDB    PDBbind15aa, >1N4H_2|Chain... at 100%
2hfpRCSB PDB    PDBbind21aa, >2HFP_2|Chain... at 100%
2o9iRCSB PDB    PDBbind15aa, >2O9I_2|Chains... at 100%
3ipqRCSB PDB    PDBbind25aa, >3IPQ_2|Chain... at 100%
3ipsRCSB PDB    PDBbind25aa, >3IPS_2|Chains... at 100%
3ipuRCSB PDB    PDBbind25aa, >3IPU_2|Chains... at 100%
3lmpRCSB PDB    PDBbind15aa, >3LMP_2|Chain... at 100%
3t03RCSB PDB    PDBbind18aa, >3T03_2|Chains... at 100%
4dm6RCSB PDB    PDBbind25aa, >4DM6_2|Chains... at 100%
4dm8RCSB PDB    PDBbind25aa, >4DM8_2|Chains... at 100%
4dmaRCSB PDB    PDBbind15aa, >4DMA_2|Chains... at 100%
4fgyRCSB PDB    PDBbind11aa, >4FGY_2|Chain... at 100%
4mg5RCSB PDB    PDBbind13aa, >4MG5_2|Chains... at 100%
4mg6RCSB PDB    PDBbind13aa, >4MG6_2|Chains... at 100%
4mg7RCSB PDB    PDBbind13aa, >4MG7_3|Chains... at 100%
4mg8RCSB PDB    PDBbind13aa, >4MG8_3|Chains... at 100%
4mg9RCSB PDB    PDBbind13aa, >4MG9_3|Chains... at 100%
4mgaRCSB PDB    PDBbind13aa, >4MGA_3|Chains... at 100%
4mgbRCSB PDB    PDBbind13aa, >4MGB_3|Chains... at 100%
4mgcRCSB PDB    PDBbind13aa, >4MGC_2|Chains... at 100%
4mgdRCSB PDB    PDBbind13aa, >4MGD_3|Chains... at 100%
4wpfRCSB PDB    PDBbind11aa, >4WPF_2|Chains... at 90%
5aviRCSB PDB    PDBbind25aa, >5AVI_2|Chains... at 100%
6fo7RCSB PDB    PDBbind15aa, >6FO7_2|Chain... at 100%
6fo8RCSB PDB    PDBbind15aa, >6FO8_2|Chain... at 100%
6fo9RCSB PDB    PDBbind15aa, >6FO9_2|Chain... at 100%
6fobRCSB PDB    PDBbind15aa, >6FOB_2|Chain... at 100%
6fodRCSB PDB    PDBbind15aa, >6FOD_2|Chain... at 100%
6ilqRCSB PDB    PDBbind25aa, >6ILQ_2|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1fm9
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameretinoic acid receptor rxr-alpha
Ligand Name570
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Ki=1nM
Release Year2001
Protein/NA SequenceCheck fasta file
Primary Reference Mol.Cell v5 pp. 545-55, 2000
Ligand Properties
Formula C34H30N2O5
Molecular Weight 546.612
Exact Mass 546.215
No. of atoms 71
No. of bonds 75
Polar Surface Area 101.66
LOGP Value 8.71      (Computed with XLOGP3)
6.68      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P37231  Q15788  P19793  
Entrez Gene IDNCBI Entrez Gene ID: 5468  8648  6256  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2022    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com