Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1jmi
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1bp0RCSB PDB    PDBbind316aa, >1BP0_1|Chain... *
1jmfRCSB PDB    PDBbind316aa, >1JMF_1|Chain... at 99%
1jmgRCSB PDB    PDBbind316aa, >1JMG_1|Chain... at 99%
1njaRCSB PDB    PDBbind316aa, >1NJA_1|Chain... at 99%
1njbRCSB PDB    PDBbind316aa, >1NJB_1|Chain... at 99%
1njcRCSB PDB    PDBbind316aa, >1NJC_1|Chain... at 99%
1njdRCSB PDB    PDBbind316aa, >1NJD_1|Chain... at 99%
1njeRCSB PDB    PDBbind316aa, >1NJE_1|Chain... at 99%
1tslRCSB PDB    PDBbind316aa, >1TSL_1|Chain... at 99%
1tsmRCSB PDB    PDBbind316aa, >1TSM_1|Chain... at 99%
1tsvRCSB PDB    PDBbind316aa, >1TSV_1|Chain... at 99%
1tsyRCSB PDB    PDBbind316aa, >1TSY_1|Chain... at 99%
3ijzRCSB PDB    PDBbind316aa, >3IJZ_1|Chain... at 99%
3ik1RCSB PDB    PDBbind316aa, >3IK1_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1bp0RCSB PDB    PDBbindUMP
1jmfRCSB PDB    PDBbindUMP
1jmgRCSB PDB    PDBbindUMP
1njbRCSB PDB    PDBbindUMP
1njdRCSB PDB    PDBbindUMP
1tsvRCSB PDB    PDBbindUMP
1tsyRCSB PDB    PDBbindUMP
2yazRCSB PDB    PDBbindUMP
3hb8RCSB PDB    PDBbindUMP

Entry Information
PDB ID1jmi
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namethymidylate synthase
Ligand NameUMP
EC.Number E.C.
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)Kd=0.87uM
Release Year1998
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. v276 pp. 113-29, 1998
Ligand Properties
Formula C9H14N2O8P
Molecular Weight 309.190
Exact Mass 309.049
No. of atoms 34
No. of bonds 35
Polar Surface Area 167.83
LOGP Value -3.14      (Computed with XLOGP3)
-2.14      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00469  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Copyright ©2007-2022    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓

Technical Support锛堟妧鏈敮鎸侊級: