Browse entries in the PDBbind-CN Database

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Related entries of code: 1pbq
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pb8RCSB PDB    PDBbind292aa, >1PB8_1|Chain... *
1pb9RCSB PDB    PDBbind292aa, >1PB9_1|Chain... at 100%
1y1mRCSB PDB    PDBbind292aa, >1Y1M_1|Chains... at 99%
1y1zRCSB PDB    PDBbind292aa, >1Y1Z_1|Chain... at 99%
1y20RCSB PDB    PDBbind292aa, >1Y20_1|Chain... at 99%
4kfqRCSB PDB    PDBbind292aa, >4KFQ_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1pbq
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameglutamate [nmda] receptor
Ligand NameDK1
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Ki=0.54uM
Release Year2003
Protein/NA SequenceCheck fasta file
Primary Reference Embo J. v22 pp. 2873-85, 2003
Ligand Properties
Formula C10H5Cl2NO3
Molecular Weight 258.058
Exact Mass 256.965
No. of atoms 21
No. of bonds 22
Polar Surface Area 70.42
LOGP Value 3.74      (Computed with XLOGP3)
2.95      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P35439  
Entrez Gene IDNCBI Entrez Gene ID: 24408  
ASDInformation of known allosteric effects of PDB entries

 
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