Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1r9l
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1sw2RCSB PDB    PDBbindBET
2b4lRCSB PDB    PDBbindBET
3l6hRCSB PDB    PDBbindBET
3mamRCSB PDB    PDBbindBET
3pppRCSB PDB    PDBbindBET

Entry Information
PDB ID1r9l
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Nameglycine betaine-binding periplasmic protein
Ligand NameBET
EC.Number E.C.-.-.-.-
Resolution 1.59(Å)
Affinity (Kd/Ki/IC50)Kd=4uM
Release Year2004
Protein/NA SequenceCheck fasta file
Primary Reference J.BIOL.CHEM. v279 pp. 5588-96, 2004
Ligand Properties
Formula C5H12NO2
Molecular Weight 118.154
Exact Mass 118.087
No. of atoms 20
No. of bonds 19
Polar Surface Area 37.3
LOGP Value 0.76      (Computed with XLOGP3)
-0.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 3
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P0AFM2  
Entrez Gene IDNCBI Entrez Gene ID: 947165  
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Copyright ©2007-2023    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓

Technical Support锛堟妧鏈敮鎸侊級: