Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1ryh
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1e96RCSB PDB    PDBbind192aa, >1E96_1|Chain... at 93%
1i4dRCSB PDB    PDBbind192aa, >1I4D_2|Chain... at 94%
1ryfRCSB PDB    PDBbind203aa, >1RYF_1|Chains... *
2fjuRCSB PDB    PDBbind178aa, >2FJU_1|Chain... at 99%
3suaRCSB PDB    PDBbind184aa, >3SUA_1|Chains... at 96%
6agpRCSB PDB    PDBbind181aa, >6AGP_1|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2wicRCSB PDB    PDBbindGNP
2wjiRCSB PDB    PDBbindGNP
3bb1RCSB PDB    PDBbindGNP
3ftqRCSB PDB    PDBbindGNP
3q72RCSB PDB    PDBbindGNP
3q7pRCSB PDB    PDBbindGNP
3q7qRCSB PDB    PDBbindGNP
3zjcRCSB PDB    PDBbindGNP
4idnRCSB PDB    PDBbindGNP
4jybRCSB PDB    PDBbindGNP
5izmRCSB PDB    PDBbindGNP
5niyRCSB PDB    PDBbindGNP

Entry Information
PDB ID1ryh
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameras-related c3 botulinum toxin substrate 1
Ligand NameGNP
EC.Number E.C.
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Kd=27.6nM
Release Year2004
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v279 pp. 4743-9, 2004
Ligand Properties
Formula C10H20N6O13P3
Molecular Weight 525.219
Exact Mass 525.030
No. of atoms 52
No. of bonds 54
Polar Surface Area 352.15
LOGP Value -7.18      (Computed with XLOGP3)
-3.11      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 5
No. of Hydrogen Bond Acceptors: 11
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P63000  
Entrez Gene IDNCBI Entrez Gene ID: 5879  
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Copyright ©2007-2022    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓

Technical Support锛堟妧鏈敮鎸侊級: