Browse entries in the PDBbind-CN Database

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Related entries of code: 1ysg
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ysiRCSB PDB    PDBbind181aa, >1YSI_1|Chain... at 97%
2yxjRCSB PDB    PDBbind181aa, >2YXJ_1|Chains... at 97%
3qkdRCSB PDB    PDBbind181aa, >3QKD_1|Chains... at 97%
3spfRCSB PDB    PDBbind172aa, >3SPF_1|Chain... at 98%
3wizRCSB PDB    PDBbind177aa, >3WIZ_1|Chains... at 100%
3zk6RCSB PDB    PDBbind181aa, >3ZK6_1|Chains... at 95%
3zlnRCSB PDB    PDBbind181aa, >3ZLN_1|Chain... at 97%
3zloRCSB PDB    PDBbind181aa, >3ZLO_1|Chain... at 97%
3zlrRCSB PDB    PDBbind158aa, >3ZLR_1|Chains... at 95%
4c52RCSB PDB    PDBbind158aa, >4C52_1|Chains... at 95%
4c5dRCSB PDB    PDBbind158aa, >4C5D_1|Chains... at 95%
4ehrRCSB PDB    PDBbind172aa, >4EHR_1|Chain... at 98%
4qvxRCSB PDB    PDBbind167aa, >4QVX_1|Chains... at 93%
4tuhRCSB PDB    PDBbind158aa, >4TUH_1|Chains... at 95%
6rnuRCSB PDB    PDBbind177aa, >6RNU_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4n98RCSB PDB    PDBbind4FC

Entry Information
PDB ID1ysg
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Nameapoptosis regulator bcl-x
Ligand Name4FC
EC.Number E.C.-.-.-.-
Resolution NMR
Affinity (Kd/Ki/IC50)Kd=0.30mM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference Nature v435 pp. 677-81, 2005
Ligand Properties
Formula C13H9FO2
Molecular Weight 216.208
Exact Mass 216.059
No. of atoms 25
No. of bonds 26
Polar Surface Area 37.3
LOGP Value 4.26      (Computed with XLOGP3)
3.19      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q07817  
Entrez Gene IDNCBI Entrez Gene ID: 598  
ASDInformation of known allosteric effects of PDB entries

 
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