Browse entries in the PDBbind-CN Database

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Related entries of code: 1yvf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1nhuRCSB PDB    PDBbind578aa, >1NHU_1|Chains... at 94%
1nhvRCSB PDB    PDBbind578aa, >1NHV_1|Chains... at 94%
1os5RCSB PDB    PDBbind576aa, >1OS5_1|Chain... at 95%
1z4uRCSB PDB    PDBbind577aa, >1Z4U_1|Chain... at 95%
2d3uRCSB PDB    PDBbind570aa, >2D3U_1|Chains... at 95%
2d3zRCSB PDB    PDBbind570aa, >2D3Z_1|Chains... at 95%
2d41RCSB PDB    PDBbind570aa, >2D41_1|Chains... at 95%
2dxsRCSB PDB    PDBbind552aa, >2DXS_1|Chains... at 94%
2fvcRCSB PDB    PDBbind563aa, >2FVC_1|Chains... at 95%
2gc8RCSB PDB    PDBbind578aa, >2GC8_1|Chains... at 95%
2haiRCSB PDB    PDBbind576aa, >2HAI_1|Chain... at 95%
2hwhRCSB PDB    PDBbind576aa, >2HWH_1|Chains... at 94%
2hwiRCSB PDB    PDBbind576aa, >2HWI_1|Chains... at 94%
2i1rRCSB PDB    PDBbind576aa, >2I1R_1|Chains... at 94%
2jc0RCSB PDB    PDBbind570aa, >2JC0_1|Chains... at 95%
2o5dRCSB PDB    PDBbind576aa, >2O5D_1|Chains... at 94%
2qe2RCSB PDB    PDBbind578aa, >2QE2_1|Chains... at 95%
2qe5RCSB PDB    PDBbind578aa, >2QE5_1|Chains... at 95%
2wcxRCSB PDB    PDBbind537aa, >2WCX_1|Chain... at 95%
2whoRCSB PDB    PDBbind536aa, >2WHO_1|Chains... at 95%
2xwyRCSB PDB    PDBbind537aa, >2XWY_1|Chain... at 95%
2yojRCSB PDB    PDBbind585aa, >2YOJ_1|Chains... *
3br9RCSB PDB    PDBbind578aa, >3BR9_1|Chains... at 95%
3bscRCSB PDB    PDBbind578aa, >3BSC_1|Chains... at 95%
3cdeRCSB PDB    PDBbind578aa, >3CDE_1|Chains... at 95%
3cj2RCSB PDB    PDBbind576aa, >3CJ2_1|Chains... at 94%
3cj3RCSB PDB    PDBbind576aa, >3CJ3_1|Chains... at 94%
3cj4RCSB PDB    PDBbind576aa, >3CJ4_1|Chains... at 94%
3cj5RCSB PDB    PDBbind576aa, >3CJ5_1|Chains... at 94%
3co9RCSB PDB    PDBbind578aa, >3CO9_1|Chains... at 95%
3csoRCSB PDB    PDBbind581aa, >3CSO_1|Chains... at 99%
3cvkRCSB PDB    PDBbind578aa, >3CVK_1|Chains... at 95%
3cwjRCSB PDB    PDBbind578aa, >3CWJ_1|Chains... at 95%
3d28RCSB PDB    PDBbind578aa, >3D28_1|Chains... at 95%
3d5mRCSB PDB    PDBbind578aa, >3D5M_1|Chains... at 95%
3e51RCSB PDB    PDBbind578aa, >3E51_1|Chains... at 95%
3fqkRCSB PDB    PDBbind576aa, >3FQK_1|Chains... at 94%
3fqlRCSB PDB    PDBbind578aa, >3FQL_1|Chain... at 93%
3frzRCSB PDB    PDBbind576aa, >3FRZ_1|Chain... at 95%
3g86RCSB PDB    PDBbind576aa, >3G86_1|Chains... at 94%
3gnvRCSB PDB    PDBbind581aa, >3GNV_1|Chains... at 99%
3gnwRCSB PDB    PDBbind581aa, >3GNW_1|Chains... at 99%
3golRCSB PDB    PDBbind581aa, >3GOL_1|Chains... at 99%
3gynRCSB PDB    PDBbind578aa, >3GYN_1|Chains... at 95%
3h59RCSB PDB    PDBbind576aa, >3H59_1|Chains... at 94%
3h5sRCSB PDB    PDBbind576aa, >3H5S_1|Chains... at 94%
3h5uRCSB PDB    PDBbind576aa, >3H5U_1|Chains... at 94%
3h98RCSB PDB    PDBbind576aa, >3H98_1|Chains... at 94%
3hhkRCSB PDB    PDBbind563aa, >3HHK_1|Chains... at 95%
3hkyRCSB PDB    PDBbind581aa, >3HKY_1|Chains... at 99%
3igvRCSB PDB    PDBbind578aa, >3IGV_1|Chains... at 95%
3lkhRCSB PDB    PDBbind576aa, >3LKH_1|Chains... at 100%
3mf5RCSB PDB    PDBbind570aa, >3MF5_1|Chains... at 95%
3mwwRCSB PDB    PDBbind576aa, >3MWW_1|Chains... at 99%
3pheRCSB PDB    PDBbind576aa, >3PHE_1|Chains... at 94%
3q0zRCSB PDB    PDBbind574aa, >3Q0Z_1|Chains... at 94%
3skaRCSB PDB    PDBbind576aa, >3SKA_1|Chains... at 100%
3skeRCSB PDB    PDBbind576aa, >3SKE_1|Chains... at 100%
3skhRCSB PDB    PDBbind576aa, >3SKH_1|Chains... at 100%
3tyqRCSB PDB    PDBbind576aa, >3TYQ_1|Chains... at 100%
3tyvRCSB PDB    PDBbind576aa, >3TYV_1|Chains... at 100%
3u4oRCSB PDB    PDBbind578aa, >3U4O_1|Chains... at 100%
3u4rRCSB PDB    PDBbind578aa, >3U4R_1|Chains... at 100%
3uphRCSB PDB    PDBbind576aa, >3UPH_1|Chains... at 100%
3upiRCSB PDB    PDBbind585aa, >3UPI_1|Chains... at 100%
3vqsRCSB PDB    PDBbind578aa, >3VQS_1|Chains... at 95%
4druRCSB PDB    PDBbind563aa, >4DRU_1|Chains... at 99%
4eo6RCSB PDB    PDBbind577aa, >4EO6_1|Chains... at 94%
4eo8RCSB PDB    PDBbind577aa, >4EO8_1|Chains... at 94%
4gmcRCSB PDB    PDBbind576aa, >4GMC_1|Chains... at 99%
4ih5RCSB PDB    PDBbind570aa, >4IH5_1|Chains... at 95%
4ih6RCSB PDB    PDBbind570aa, >4IH6_1|Chains... at 95%
4ih7RCSB PDB    PDBbind570aa, >4IH7_1|Chains... at 95%
4iz0RCSB PDB    PDBbind576aa, >4IZ0_1|Chains... at 99%
4j04RCSB PDB    PDBbind576aa, >4J04_1|Chains... at 99%
4j06RCSB PDB    PDBbind576aa, >4J06_1|Chains... at 99%
4j08RCSB PDB    PDBbind576aa, >4J08_1|Chains... at 99%
4j0aRCSB PDB    PDBbind576aa, >4J0A_1|Chains... at 99%
4jjsRCSB PDB    PDBbind576aa, >4JJS_1|Chains... at 99%
4jjuRCSB PDB    PDBbind576aa, >4JJU_1|Chains... at 99%
4ju3RCSB PDB    PDBbind576aa, >4JU3_1|Chains... at 99%
4ju4RCSB PDB    PDBbind576aa, >4JU4_1|Chains... at 99%
4ju6RCSB PDB    PDBbind576aa, >4JU6_1|Chains... at 99%
4ju7RCSB PDB    PDBbind576aa, >4JU7_1|Chains... at 99%
4jvqRCSB PDB    PDBbind576aa, >4JVQ_1|Chains... at 99%
4kaiRCSB PDB    PDBbind577aa, >4KAI_1|Chains... at 95%
4kb7RCSB PDB    PDBbind580aa, >4KB7_1|Chains... at 95%
4kbiRCSB PDB    PDBbind580aa, >4KBI_1|Chains... at 95%
4mibRCSB PDB    PDBbind570aa, >4MIB_1|Chains... at 95%
4mk7RCSB PDB    PDBbind570aa, >4MK7_1|Chains... at 95%
4mk8RCSB PDB    PDBbind570aa, >4MK8_1|Chains... at 95%
4mk9RCSB PDB    PDBbind570aa, >4MK9_1|Chains... at 95%
4mkaRCSB PDB    PDBbind570aa, >4MKA_1|Chains... at 95%
4mz4RCSB PDB    PDBbind576aa, >4MZ4_1|Chains... at 100%
4nldRCSB PDB    PDBbind574aa, >4NLD_1|Chain... at 94%
4oowRCSB PDB    PDBbind578aa, >4OOW_1|Chains... at 99%
4tlrRCSB PDB    PDBbind578aa, >4TLR_1|Chain... at 95%
4tn2RCSB PDB    PDBbind577aa, >4TN2_1|Chain... at 95%
4txsRCSB PDB    PDBbind566aa, >4TXS_1|Chains... at 95%
4ty8RCSB PDB    PDBbind566aa, >4TY8_2|Chain... at 95%
4ty9RCSB PDB    PDBbind566aa, >4TY9_1|Chains... at 95%
4tyaRCSB PDB    PDBbind566aa, >4TYA_1|Chains... at 95%
4tybRCSB PDB    PDBbind566aa, >4TYB_1|Chains... at 95%
5czbRCSB PDB    PDBbind563aa, >5CZB_1|Chains... at 99%
5pzmRCSB PDB    PDBbind574aa, >5PZM_1|Chains... at 94%
5pznRCSB PDB    PDBbind574aa, >5PZN_1|Chains... at 94%
5trhRCSB PDB    PDBbind574aa, >5TRH_1|Chains... at 94%
5triRCSB PDB    PDBbind574aa, >5TRI_1|Chains... at 94%
5trjRCSB PDB    PDBbind574aa, >5TRJ_1|Chains... at 94%
5trkRCSB PDB    PDBbind574aa, >5TRK_1|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID1yvf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namerna-dependent rna polymerase
Ligand NamePH7
EC.Number E.C.2.7.7.48
Resolution 2.5(Å)
Affinity (Kd/Ki/IC50)IC50=0.10uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference Bioorg.Med.Chem.Lett.v15;pp.2481-2486
Ligand Properties
Formula C22H16BrNO4
Molecular Weight 438.271
Exact Mass 437.026
No. of atoms 44
No. of bonds 46
Polar Surface Area 75.63
LOGP Value 6.02      (Computed with XLOGP3)
5.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O93077  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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