Browse entries in the PDBbind-CN Database

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Related entries of code: 1kdk
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1d2sRCSB PDB    PDBbind170aa, >1D2S_1|Chain... at 99%
1lhuRCSB PDB    PDBbind189aa, >1LHU_1|Chain... at 99%
1lhvRCSB PDB    PDBbind189aa, >1LHV_1|Chain... at 99%
1lhwRCSB PDB    PDBbind189aa, >1LHW_1|Chain... at 99%
6pybRCSB PDB    PDBbind205aa, >6PYB_1|Chain... at 100%
6pyaRCSB PDB    PDBbind205aa, >6PYA_1|Chain... *
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1d2sRCSB PDB    PDBbindDHT
1i37RCSB PDB    PDBbindDHT
2amaRCSB PDB    PDBbindDHT

Entry Information
PDB ID1kdk
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namesex hormone-binding globulin
Ligand NameDHT
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=0.9nM
Release Year2002
Protein/NA SequenceCheck fasta file
Primary Reference J.Mol.Biol. v318 pp. 621-6, 2002
Ligand Properties
Formula C19H30O2
Molecular Weight 290.440
Exact Mass 290.225
No. of atoms 51
No. of bonds 54
Polar Surface Area 37.3
LOGP Value 3.77      (Computed with XLOGP3)
3.96      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04278  
Entrez Gene IDNCBI Entrez Gene ID: 6462  
ASDInformation of known allosteric effects of PDB entries

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