Browse entries in the PDBbind-CN Database

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Related entries of code: 1x9d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1fo2RCSB PDB    PDBbind460aa, >1FO2_1|Chain... at 99%
1fo3RCSB PDB    PDBbind460aa, >1FO3_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4aypRCSB PDB    PDBbindSMD

Entry Information
PDB ID1x9d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namemannosyl-oligosaccharide 1,2-alpha-mannosidase
Ligand NameSMD
EC.Number E.C.3.2.1.113
Resolution 1.41(Å)
Affinity (Kd/Ki/IC50)Kd=110uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v280 pp. 16197-207, 2005
Ligand Properties
Formula C13H24O10S
Molecular Weight 372.389
Exact Mass 372.109
No. of atoms 48
No. of bonds 49
Polar Surface Area 194.6
LOGP Value -2.85      (Computed with XLOGP3)
-4.03      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UKM7  
Entrez Gene IDNCBI Entrez Gene ID: 11253  
ASDInformation of known allosteric effects of PDB entries

 
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