Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 1zkn
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1mkdRCSB PDB    PDBbind328aa, >1MKD_1|Chains... at 99%
1oynRCSB PDB    PDBbind360aa, >1OYN_1|Chains... at 100%
1q9mRCSB PDB    PDBbind360aa, >1Q9M_1|Chains... at 100%
1xomRCSB PDB    PDBbind349aa, >1XOM_1|Chains... at 94%
1xonRCSB PDB    PDBbind349aa, >1XON_1|Chains... at 94%
1xoqRCSB PDB    PDBbind349aa, >1XOQ_1|Chains... at 94%
1xorRCSB PDB    PDBbind349aa, >1XOR_1|Chains... at 94%
1y2bRCSB PDB    PDBbind349aa, >1Y2B_1|Chains... at 94%
1y2cRCSB PDB    PDBbind349aa, >1Y2C_1|Chains... at 94%
1y2dRCSB PDB    PDBbind349aa, >1Y2D_1|Chains... at 94%
1y2eRCSB PDB    PDBbind349aa, >1Y2E_1|Chains... at 94%
1y2kRCSB PDB    PDBbind349aa, >1Y2K_1|Chains... at 94%
2fm0RCSB PDB    PDBbind361aa, >2FM0_1|Chains... at 100%
2fm5RCSB PDB    PDBbind361aa, >2FM5_1|Chains... at 100%
2qynRCSB PDB    PDBbind328aa, >2QYN_1|Chains... at 100%
3g4gRCSB PDB    PDBbind421aa, >3G4G_1|Chains... at 95%
3g4iRCSB PDB    PDBbind381aa, >3G4I_1|Chains... at 97%
3g4kRCSB PDB    PDBbind381aa, >3G4K_1|Chains... at 97%
3g4lRCSB PDB    PDBbind381aa, >3G4L_1|Chains... at 97%
3g58RCSB PDB    PDBbind381aa, >3G58_1|Chains... at 97%
3iadRCSB PDB    PDBbind377aa, >3IAD_1|Chains... at 91%
3sl4RCSB PDB    PDBbind361aa, >3SL4_1|Chains... at 100%
3sl5RCSB PDB    PDBbind359aa, >3SL5_1|Chains... at 99%
3sl8RCSB PDB    PDBbind361aa, >3SL8_1|Chains... at 100%
3v9bRCSB PDB    PDBbind360aa, >3V9B_1|Chains... at 100%
4wcuRCSB PDB    PDBbind359aa, >4WCU_1|Chains... at 100%
5k1iRCSB PDB    PDBbind326aa, >5K1I_1|Chains... at 100%
5k32RCSB PDB    PDBbind325aa, >5K32_1|Chains... at 99%
5tkbRCSB PDB    PDBbind381aa, >5TKB_1|Chains... at 97%
5wqaRCSB PDB    PDBbind334aa, >5WQA_1|Chains... at 100%
6f6uRCSB PDB    PDBbind343aa, >6F6U_1|Chains... at 97%
6f8rRCSB PDB    PDBbind343aa, >6F8R_1|Chains... at 97%
6f8tRCSB PDB    PDBbind343aa, >6F8T_1|Chains... at 97%
6f8uRCSB PDB    PDBbind343aa, >6F8U_1|Chains... at 97%
6f8vRCSB PDB    PDBbind343aa, >6F8V_1|Chains... at 97%
6f8wRCSB PDB    PDBbind343aa, >6F8W_1|Chains... at 97%
6f8xRCSB PDB    PDBbind343aa, >6F8X_1|Chains... at 97%
6fdcRCSB PDB    PDBbind343aa, >6FDC_1|Chains... at 97%
6njjRCSB PDB    PDBbind370aa, >6NJJ_1|Chains... at 92%
6njiRCSB PDB    PDBbind370aa, >6NJI_1|Chains... at 92%
6njhRCSB PDB    PDBbind370aa, >6NJH_1|Chains... at 92%
6inmRCSB PDB    PDBbind349aa, >6INM_1|Chains... at 94%
6indRCSB PDB    PDBbind349aa, >6IND_1|Chains... at 94%
6imtRCSB PDB    PDBbind349aa, >6IMT_1|Chains... at 94%
6imoRCSB PDB    PDBbind349aa, >6IMO_1|Chains... at 94%
6imrRCSB PDB    PDBbind349aa, >6IMR_1|Chains... at 94%
6imiRCSB PDB    PDBbind349aa, >6IMI_1|Chains... at 94%
6imdRCSB PDB    PDBbind349aa, >6IMD_1|Chains... at 94%
6imbRCSB PDB    PDBbind349aa, >6IMB_1|Chains... at 94%
6im6RCSB PDB    PDBbind349aa, >6IM6_1|Chains... at 94%
6ftwRCSB PDB    PDBbind364aa, >6FTW_1|Chains... at 98%
5wh6RCSB PDB    PDBbind507aa, >5WH6_1|Chains... *
5wh5RCSB PDB    PDBbind327aa, >5WH5_1|Chains... at 100%
6inkRCSB PDB    PDBbind349aa, >6INK_1|Chains... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1sojRCSB PDB    PDBbindIBM
1zklRCSB PDB    PDBbindIBM
2hd1RCSB PDB    PDBbindIBM
2r8qRCSB PDB    PDBbindIBM
3ecnRCSB PDB    PDBbindIBM
3ituRCSB PDB    PDBbindIBM
3jwrRCSB PDB    PDBbindIBM
3qi4RCSB PDB    PDBbindIBM
Entry Information
PDB ID1zkn
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namecamp-specific 3',5'-cyclic phosphodiesterase 4d
Ligand NameIBM
EC.Number E.C.3.1.4.17
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)IC50=31uM
Release Year2005
Protein/NA SequenceCheck fasta file
Primary Reference J.Biol.Chem. v279 pp. 13095-101, 2004
Ligand Properties
Formula C10H14N4O2
Molecular Weight 222.244
Exact Mass 222.112
No. of atoms 30
No. of bonds 31
Polar Surface Area 72.68
LOGP Value 0.95      (Computed with XLOGP3)
0.08      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q08499  
Entrez Gene IDNCBI Entrez Gene ID: 5144  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com