Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2c9b
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2c92RCSB PDB    PDBbind160aa, >2C92_1|Chains... *
2c94RCSB PDB    PDBbind160aa, >2C94_1|Chains... at 100%
2c97RCSB PDB    PDBbind160aa, >2C97_1|Chains... at 100%
2c9dRCSB PDB    PDBbind160aa, >2C9D_1|Chains... at 100%
2vi5RCSB PDB    PDBbind160aa, >2VI5_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2c9b
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name6,7-dimethyl-8-ribityllumazine synthase
Ligand NamePUG
EC.Number E.C.2.5.1.9
Resolution 2.75(Å)
Affinity (Kd/Ki/IC50)Kd=2.88uM
Release Year2006
Protein/NA SequenceCheck fasta file
Primary Reference FEBS J.v273;pp.4790
Ligand Properties
Formula C10H14N4O7
Molecular Weight 302.241
Exact Mass 302.086
No. of atoms 35
No. of bonds 36
Polar Surface Area 184.43
LOGP Value -4.27      (Computed with XLOGP3)
-4.22      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WHE9  
Entrez Gene IDNCBI Entrez Gene ID: 886681  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2021    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com