Browse entries in the PDBbind-CN Database

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Related entries of code: 2jdy
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2bojRCSB PDB    PDBbind114aa, >2BOJ_1|Chains... at 100%
2jdhRCSB PDB    PDBbind115aa, >2JDH_1|Chains... *
2jdkRCSB PDB    PDBbind115aa, >2JDK_1|Chains... at 100%
2jdmRCSB PDB    PDBbind115aa, >2JDM_1|Chains... at 99%
2jdnRCSB PDB    PDBbind115aa, >2JDN_1|Chains... at 99%
2jdpRCSB PDB    PDBbind115aa, >2JDP_1|Chains... at 99%
2jduRCSB PDB    PDBbind115aa, >2JDU_1|Chains... at 99%
3dcqRCSB PDB    PDBbind114aa, >3DCQ_1|Chains... at 100%
3zdvRCSB PDB    PDBbind115aa, >3ZDV_1|Chains... at 100%
5a3oRCSB PDB    PDBbind114aa, >5A3O_1|Chains... at 100%
5d2aRCSB PDB    PDBbind114aa, >5D2A_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1rdlRCSB PDB    PDBbindMMA
2bv4RCSB PDB    PDBbindMMA
2jdnRCSB PDB    PDBbindMMA
Entry Information
PDB ID2jdy
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameFUCOSE-BINDING LECTIN PA-IIL(G24N)
Ligand NameMMA
EC.Number E.C.-.-.-.-
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Kd=42.9uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference BMC Structural Biology. 2007, 7:36.
Ligand Properties
Formula C7H14O6
Molecular Weight 194.182
Exact Mass 194.079
No. of atoms 27
No. of bonds 27
Polar Surface Area 99.38
LOGP Value -2.05      (Computed with XLOGP3)
-2.57      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9HYN5  
Entrez Gene IDNCBI Entrez Gene ID: 882528  
ASDInformation of known allosteric effects of PDB entries
 
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