Browse entries in the PDBbind-CN Database

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Related entries of code: 2qcm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2qcdRCSB PDB    PDBbind260aa, >2QCD_2|Chain... at 98%
2qcfRCSB PDB    PDBbind260aa, >2QCF_1|Chain... at 98%
2qcgRCSB PDB    PDBbind260aa, >2QCG_1|Chains... at 98%
2qchRCSB PDB    PDBbind260aa, >2QCH_1|Chains... at 98%
2qcnRCSB PDB    PDBbind260aa, >2QCN_1|Chains... at 98%
3ewuRCSB PDB    PDBbind260aa, >3EWU_1|Chains... at 98%
3ewzRCSB PDB    PDBbind260aa, >3EWZ_1|Chains... at 98%
3ex2RCSB PDB    PDBbind260aa, >3EX2_1|Chains... at 98%
3ex3RCSB PDB    PDBbind260aa, >3EX3_1|Chains... at 98%
3ex6RCSB PDB    PDBbind260aa, >3EX6_1|Chains... at 98%
3g3dRCSB PDB    PDBbind312aa, >3G3D_1|Chains... *
3g3mRCSB PDB    PDBbind279aa, >3G3M_1|Chain... at 92%
3l0kRCSB PDB    PDBbind260aa, >3L0K_1|Chains... at 98%
3l0nRCSB PDB    PDBbind260aa, >3L0N_1|Chains... at 98%
3mi2RCSB PDB    PDBbind279aa, >3MI2_1|Chains... at 92%
4hkpRCSB PDB    PDBbind312aa, >4HKP_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2qcm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOMPD
Ligand NameJW5
EC.Number E.C.-.-.-.-
Resolution 1.67(Å)
Affinity (Kd/Ki/IC50)IC50=450uM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Structure Vol. 16: pp. 82-92
Ligand Properties
Formula C10H16N2O10P
Molecular Weight 355.215
Exact Mass 355.054
No. of atoms 39
No. of bonds 40
Polar Surface Area 208.29
LOGP Value -4.99      (Computed with XLOGP3)
-3.68      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P11172  
Entrez Gene IDNCBI Entrez Gene ID: 7372  
ASDInformation of known allosteric effects of PDB entries

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