Browse entries in the PDBbind-CN Database

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Related entries of code: 2x9f
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2vwuRCSB PDB    PDBbind302aa, >2VWU_1|Chain... *
2vwvRCSB PDB    PDBbind302aa, >2VWV_1|Chain... at 100%
2vwwRCSB PDB    PDBbind302aa, >2VWW_1|Chain... at 100%
2vwxRCSB PDB    PDBbind302aa, >2VWX_1|Chain... at 100%
2vwyRCSB PDB    PDBbind302aa, >2VWY_1|Chain... at 100%
2vwzRCSB PDB    PDBbind302aa, >2VWZ_1|Chain... at 100%
2vx0RCSB PDB    PDBbind302aa, >2VX0_1|Chain... at 100%
2vx1RCSB PDB    PDBbind302aa, >2VX1_1|Chain... at 100%
2xvdRCSB PDB    PDBbind302aa, >2XVD_1|Chain... at 100%
4aw5RCSB PDB    PDBbind291aa, >4AW5_1|Chain... at 97%
4bb4RCSB PDB    PDBbind302aa, >4BB4_1|Chain... at 100%
6fniRCSB PDB    PDBbind297aa, >6FNI_1|Chain... at 98%
6fnjRCSB PDB    PDBbind297aa, >6FNJ_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2x9f
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameEPHRIN TYPE-B RECEPTOR 4, EPHB4 kinase domain
Ligand NameX9F
EC.Number E.C.
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)IC50=61nM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Bioorg.Med.Chem.Lett. Vol. 20: pp. 6242-6245
Ligand Properties
Formula C18H16N6O2S
Molecular Weight 380.424
Exact Mass 380.106
No. of atoms 43
No. of bonds 46
Polar Surface Area 121.04
LOGP Value 2.82      (Computed with XLOGP3)
4.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P54760  
Entrez Gene IDNCBI Entrez Gene ID: 2050  
ASDInformation of known allosteric effects of PDB entries

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