Browse entries in the PDBbind-CN Database

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Related entries of code: 2yfx
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2xb7RCSB PDB    PDBbind315aa, >2XB7_1|Chain... at 99%
2xbaRCSB PDB    PDBbind315aa, >2XBA_1|Chain... at 99%
2xp2RCSB PDB    PDBbind327aa, >2XP2_1|Chain... at 96%
3aoxRCSB PDB    PDBbind344aa, >3AOX_1|Chain... at 99%
4anqRCSB PDB    PDBbind342aa, >4ANQ_1|Chain... at 92%
4cd0RCSB PDB    PDBbind342aa, >4CD0_1|Chain... at 92%
4cliRCSB PDB    PDBbind327aa, >4CLI_1|Chain... at 96%
4cljRCSB PDB    PDBbind327aa, >4CLJ_1|Chain... at 96%
4cmoRCSB PDB    PDBbind327aa, >4CMO_1|Chain... at 96%
4cmtRCSB PDB    PDBbind327aa, >4CMT_1|Chain... at 96%
4cmuRCSB PDB    PDBbind327aa, >4CMU_1|Chain... at 96%
4cnhRCSB PDB    PDBbind327aa, >4CNH_1|Chains... at 96%
4dceRCSB PDB    PDBbind333aa, >4DCE_1|Chains... at 100%
4fnyRCSB PDB    PDBbind327aa, >4FNY_1|Chain... at 99%
4fnzRCSB PDB    PDBbind327aa, >4FNZ_1|Chain... at 100%
4fobRCSB PDB    PDBbind353aa, >4FOB_1|Chain... *
4focRCSB PDB    PDBbind353aa, >4FOC_1|Chain... at 100%
4fodRCSB PDB    PDBbind333aa, >4FOD_1|Chain... at 100%
4joaRCSB PDB    PDBbind344aa, >4JOA_1|Chain... at 98%
5a9uRCSB PDB    PDBbind327aa, >5A9U_1|Chain... at 96%
5aa8RCSB PDB    PDBbind327aa, >5AA8_1|Chain... at 96%
5aa9RCSB PDB    PDBbind327aa, >5AA9_1|Chain... at 96%
5aaaRCSB PDB    PDBbind327aa, >5AAA_1|Chain... at 96%
5aabRCSB PDB    PDBbind327aa, >5AAB_1|Chain... at 96%
5aacRCSB PDB    PDBbind327aa, >5AAC_1|Chain... at 96%
5ftoRCSB PDB    PDBbind315aa, >5FTO_1|Chain... at 99%
5ftqRCSB PDB    PDBbind315aa, >5FTQ_1|Chain... at 99%
5iugRCSB PDB    PDBbind327aa, >5IUG_1|Chain... at 100%
5iuhRCSB PDB    PDBbind327aa, >5IUH_1|Chain... at 100%
5iuiRCSB PDB    PDBbind327aa, >5IUI_1|Chain... at 100%
5kz0RCSB PDB    PDBbind327aa, >5KZ0_1|Chain... at 96%
6mx8RCSB PDB    PDBbind307aa, >6MX8_1|Chain... at 99%
6edlRCSB PDB    PDBbind322aa, >6EDL_1|Chain... at 98%
6ebwRCSB PDB    PDBbind322aa, >6EBW_1|Chain... at 98%
6e0rRCSB PDB    PDBbind322aa, >6E0R_1|Chain... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2wgjRCSB PDB    PDBbindVGH
2xp2RCSB PDB    PDBbindVGH
3zbfRCSB PDB    PDBbindVGH
4anqRCSB PDB    PDBbindVGH
4c9wRCSB PDB    PDBbindVGH
5aaaRCSB PDB    PDBbindVGH
5aabRCSB PDB    PDBbindVGH
5aacRCSB PDB    PDBbindVGH

Entry Information
PDB ID2yfx
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Ligand NameVGH
EC.Number E.C.
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Ki=8.2nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2014) J.Med.Chem. Vol. 57: pp. 1170
Ligand Properties
Formula C21H23Cl2FN5O
Molecular Weight 451.345
Exact Mass 450.126
No. of atoms 53
No. of bonds 56
Polar Surface Area 82.57
LOGP Value 3.69      (Computed with XLOGP3)
6.16      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UM73  
Entrez Gene IDNCBI Entrez Gene ID: 238  
ASDInformation of known allosteric effects of PDB entries

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