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Related entries of code: 2c9d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2c92RCSB PDB    PDBbind160aa, >2C92_1|Chains... *
2c94RCSB PDB    PDBbind160aa, >2C94_1|Chains... at 100%
2c97RCSB PDB    PDBbind160aa, >2C97_1|Chains... at 100%
2c9bRCSB PDB    PDBbind160aa, >2C9B_1|Chains... at 100%
2vi5RCSB PDB    PDBbind160aa, >2VI5_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2c9d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Name6,7-dimethyl-8-ribityllumazine synthase
Ligand NamePHR
EC.Number E.C.
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Kd=0.48uM
Release Year2006
Protein/NA SequenceCheck fasta file
Primary Reference FEBS J.v273;pp.4790
Ligand Properties
Formula C16H28N4O11P
Molecular Weight 483.387
Exact Mass 483.149
No. of atoms 60
No. of bonds 61
Polar Surface Area 257.08
LOGP Value -4.60      (Computed with XLOGP3)
-3.51      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 15
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WHE9  
Entrez Gene IDNCBI Entrez Gene ID: 886681  
ASDInformation of known allosteric effects of PDB entries

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