Browse entries in the PDBbind-CN Database

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Related entries of code: 2rkd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1m51RCSB PDB    PDBbind625aa, >1M51_1|Chain... *
1nhxRCSB PDB    PDBbind625aa, >1NHX_1|Chain... at 100%
2gmvRCSB PDB    PDBbind625aa, >2GMV_1|Chains... at 100%
2rk7RCSB PDB    PDBbind624aa, >2RK7_1|Chains... at 90%
2rk8RCSB PDB    PDBbind624aa, >2RK8_1|Chains... at 90%
2rkaRCSB PDB    PDBbind624aa, >2RKA_1|Chains... at 90%
2rkeRCSB PDB    PDBbind624aa, >2RKE_1|Chain... at 90%
3moeRCSB PDB    PDBbind624aa, >3MOE_1|Chain... at 90%
3mofRCSB PDB    PDBbind624aa, >3MOF_1|Chains... at 90%
3mohRCSB PDB    PDBbind624aa, >3MOH_1|Chains... at 90%
6p5oRCSB PDB    PDBbind622aa, >6P5O_1|Chain... at 90%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1iigRCSB PDB    PDBbind3PP
Entry Information
PDB ID2rkd
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamePEPCK-Mn2+
Ligand Name3PP
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Ki=1.9mM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Biochemistry Vol. 47: pp. 2099-2109
Ligand Properties
Formula C3H8O5P
Molecular Weight 155.066
Exact Mass 155.011
No. of atoms 17
No. of bonds 16
Polar Surface Area 111.58
LOGP Value -0.82      (Computed with XLOGP3)
-0.80      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 1
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P07379  
Entrez Gene IDNCBI Entrez Gene ID: 362282  
ASDInformation of known allosteric effects of PDB entries
 
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