Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2vtd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2jfhRCSB PDB    PDBbind445aa, >2JFH_1|Chain... *
2uuoRCSB PDB    PDBbind445aa, >2UUO_1|Chain... at 100%
2uupRCSB PDB    PDBbind445aa, >2UUP_1|Chain... at 100%
2vteRCSB PDB    PDBbind445aa, >2VTE_1|Chain... at 100%
2x5oRCSB PDB    PDBbind439aa, >2X5O_1|Chain... at 100%
2xpcRCSB PDB    PDBbind439aa, >2XPC_1|Chain... at 100%
2y1oRCSB PDB    PDBbind445aa, >2Y1O_1|Chain... at 100%
2y67RCSB PDB    PDBbind445aa, >2Y67_1|Chain... at 100%
2y68RCSB PDB    PDBbind445aa, >2Y68_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2vtd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameUDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE
Ligand NameLKM
EC.Number E.C.6.3.2.9
Resolution 1.94(Å)
Affinity (Kd/Ki/IC50)IC50=85uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Med.Chem. Vol. 51: pp. 7486-7494
Ligand Properties
Formula C23H19FN2O7S
Molecular Weight 486.470
Exact Mass 486.090
No. of atoms 53
No. of bonds 55
Polar Surface Area 162.17
LOGP Value 5.23      (Computed with XLOGP3)
4.50      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P14900  
Entrez Gene IDNCBI Entrez Gene ID: 944818  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com