Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 2x0y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2cbjRCSB PDB    PDBbind594aa, >2CBJ_1|Chains... *
2j62RCSB PDB    PDBbind594aa, >2J62_1|Chains... at 99%
2vurRCSB PDB    PDBbind594aa, >2VUR_1|Chains... at 100%
2wb5RCSB PDB    PDBbind594aa, >2WB5_1|Chains... at 99%
2xpkRCSB PDB    PDBbind594aa, >2XPK_1|Chains... at 99%
6rheRCSB PDB    PDBbind592aa, >6RHE_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID2x0y
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameO-GlcNAcase
Ligand NameX0T
EC.Number E.C.3.2.1.52
Resolution 2.25(Å)
Affinity (Kd/Ki/IC50)Ki=25uM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference FEBS Lett. 584(4): 694-700
Ligand Properties
Formula C10H14N4O4
Molecular Weight 254.243
Exact Mass 254.102
No. of atoms 32
No. of bonds 33
Polar Surface Area 102.28
LOGP Value -1.80      (Computed with XLOGP3)
-2.21      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q0TR53  
Entrez Gene IDNCBI Entrez Gene ID: 29571445  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com