Browse entries in the PDBbind-CN Database

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Related entries of code: 2yc0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1yciRCSB PDB    PDBbind349aa, >1YCI_1|Chain... at 100%
2w0xRCSB PDB    PDBbind349aa, >2W0X_1|Chain... at 100%
2wa3RCSB PDB    PDBbind349aa, >2WA3_1|Chain... at 100%
2wa4RCSB PDB    PDBbind349aa, >2WA4_1|Chain... at 100%
2ydeRCSB PDB    PDBbind352aa, >2YDE_1|Chain... at 100%
4ai8RCSB PDB    PDBbind352aa, >4AI8_1|Chain... at 100%
4bioRCSB PDB    PDBbind352aa, >4BIO_1|Chain... at 100%
5op6RCSB PDB    PDBbind351aa, >5OP6_1|Chain... at 100%
5op8RCSB PDB    PDBbind350aa, >5OP8_1|Chain... at 99%
5opcRCSB PDB    PDBbind350aa, >5OPC_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2ybkRCSB PDB    PDBbind2HG
2ybpRCSB PDB    PDBbind2HG

Entry Information
PDB ID2yc0
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR
Ligand Name2HG
EC.Number E.C.1.14.11.16
Resolution 2.15(Å)
Affinity (Kd/Ki/IC50)IC50=1500uM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Embo Rep. Vol. 12: pp. 463-469
Ligand Properties
Formula C5H8O5
Molecular Weight 148.114
Exact Mass 148.037
No. of atoms 18
No. of bonds 17
Polar Surface Area 94.83
LOGP Value 1.35      (Computed with XLOGP3)
-0.70      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9NWT6  
Entrez Gene IDNCBI Entrez Gene ID: 55662  
ASDInformation of known allosteric effects of PDB entries

 
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