Browse entries in the PDBbind-CN Database

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Related entries of code: 2ydw
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2yekRCSB PDB    PDBbind153aa, >2YEK_1|Chains... at 100%
3aqaRCSB PDB    PDBbind128aa, >3AQA_1|Chains... at 95%
4a9iRCSB PDB    PDBbind154aa, >4A9I_1|Chains... *
4a9mRCSB PDB    PDBbind154aa, >4A9M_1|Chains... at 100%
4a9nRCSB PDB    PDBbind154aa, >4A9N_1|Chains... at 100%
4aknRCSB PDB    PDBbind153aa, >4AKN_1|Chains... at 100%
4algRCSB PDB    PDBbind154aa, >4ALG_1|Chain... at 100%
4uyfRCSB PDB    PDBbind154aa, >4UYF_2|Chains... at 100%
4uyhRCSB PDB    PDBbind154aa, >4UYH_1|Chains... at 100%
6mo9RCSB PDB    PDBbind126aa, >6MO9_1|Chains... at 98%
6mo8RCSB PDB    PDBbind126aa, >6MO8_1|Chains... at 98%
6mo7RCSB PDB    PDBbind126aa, >6MO7_1|Chains... at 98%
6k05RCSB PDB    PDBbind122aa, >6K05_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2yelRCSB PDB    PDBbindWSH
2yemRCSB PDB    PDBbindWSH

Entry Information
PDB ID2ydw
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameBROMODOMAIN-CONTAINING PROTEIN 2
Ligand NameWSH
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=46.0nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Med.Chem. Vol. 54: pp. 3827
Ligand Properties
Formula C25H21N5O2
Molecular Weight 423.467
Exact Mass 423.170
No. of atoms 53
No. of bonds 57
Polar Surface Area 81.4
LOGP Value 3.95      (Computed with XLOGP3)
4.18      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P25440  
Entrez Gene IDNCBI Entrez Gene ID: 6046  
ASDInformation of known allosteric effects of PDB entries

 
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