Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3dcq
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2bojRCSB PDB    PDBbind114aa, >2BOJ_1|Chains... at 100%
2jdhRCSB PDB    PDBbind115aa, >2JDH_1|Chains... *
2jdkRCSB PDB    PDBbind115aa, >2JDK_1|Chains... at 100%
2jdmRCSB PDB    PDBbind115aa, >2JDM_1|Chains... at 99%
2jdnRCSB PDB    PDBbind115aa, >2JDN_1|Chains... at 99%
2jdpRCSB PDB    PDBbind115aa, >2JDP_1|Chains... at 99%
2jduRCSB PDB    PDBbind115aa, >2JDU_1|Chains... at 99%
2jdyRCSB PDB    PDBbind115aa, >2JDY_1|Chains... at 99%
3zdvRCSB PDB    PDBbind115aa, >3ZDV_1|Chains... at 100%
5a3oRCSB PDB    PDBbind114aa, >5A3O_1|Chains... at 100%
5d2aRCSB PDB    PDBbind114aa, >5D2A_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3dcq
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameFucose-binding lectin PA-IIL
Ligand Name2G0
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)IC50=5.94uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Chem.Biol. Vol. 15: pp. 1249-1257
Ligand Properties
Formula C23H40N4O8
Molecular Weight 500.586
Exact Mass 500.285
No. of atoms 75
No. of bonds 76
Polar Surface Area 191.52
LOGP Value -1.26      (Computed with XLOGP3)
-0.43      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9HYN5  
Entrez Gene IDNCBI Entrez Gene ID: 882528  
ASDInformation of known allosteric effects of PDB entries

 
This site has been visited times since Nov 2007.


Copyright ©2007-2022    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com