Browse entries in the PDBbind-CN Database

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Related entries of code: 3g1d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1km3RCSB PDB    PDBbind247aa, >1KM3_1|Chain... at 99%
1lolRCSB PDB    PDBbind229aa, >1LOL_1|Chains... at 99%
1loqRCSB PDB    PDBbind228aa, >1LOQ_1|Chain... at 98%
1lorRCSB PDB    PDBbind228aa, >1LOR_1|Chain... at 98%
1losRCSB PDB    PDBbind224aa, >1LOS_1|Chains... at 98%
1x1zRCSB PDB    PDBbind252aa, >1X1Z_1|Chains... *
2zz1RCSB PDB    PDBbind252aa, >2ZZ1_1|Chains... at 100%
2zz2RCSB PDB    PDBbind252aa, >2ZZ2_1|Chains... at 99%
2zz6RCSB PDB    PDBbind252aa, >2ZZ6_1|Chains... at 100%
3g1vRCSB PDB    PDBbind228aa, >3G1V_1|Chains... at 98%
3w07RCSB PDB    PDBbind252aa, >3W07_1|Chain... at 100%
3wjwRCSB PDB    PDBbind252aa, >3WJW_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1loqRCSB PDB    PDBbindU
2ylcRCSB PDB    PDBbindU

Entry Information
PDB ID3g1d
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameMt orotidine 5'-monophosphate decarboxylase (OMPDC)
Ligand NameU
EC.Number E.C.4.1.1.23
Resolution 1.5(Å)
Affinity (Kd/Ki/IC50)Ki=330uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J. Med. Chem., Vol.55, pp.9988-9997
Ligand Properties
Formula C9H14N2O9P
Molecular Weight 325.189
Exact Mass 325.044
No. of atoms 35
No. of bonds 36
Polar Surface Area 188.06
LOGP Value -4.11      (Computed with XLOGP3)
-3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O26232  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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