Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3ga5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1gcaRCSB PDB    PDBbind309aa, >1GCA_1|Chain... *
2qw1RCSB PDB    PDBbind309aa, >2QW1_1|Chain... at 94%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID3ga5
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameD-galactose-binding periplasmic protein
Ligand NameRGG
EC.Number E.C.-.-.-.-
Resolution 1.87(Å)
Affinity (Kd/Ki/IC50)Kd=3.2uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) Febs J. Vol. 276: pp. 2116-2124
Ligand Properties
Formula C9H18O8
Molecular Weight 254.234
Exact Mass 254.100
No. of atoms 35
No. of bonds 35
Polar Surface Area 139.84
LOGP Value -3.35      (Computed with XLOGP3)
-3.84      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 11
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P23905  
Entrez Gene IDNCBI Entrez Gene ID: 1253712  
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓

Technical Support锛堟妧鏈敮鎸侊級: