Browse entries in the PDBbind-CN Database

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Related entries of code: 3kyf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1g9tRCSB PDB    PDBbind5GP
1qk3RCSB PDB    PDBbind5GP
2fxvRCSB PDB    PDBbind5GP
3kygRCSB PDB    PDBbind5GP
3rl3RCSB PDB    PDBbind5GP
3rl4RCSB PDB    PDBbind5GP
4g0zRCSB PDB    PDBbind5GP
5k1dRCSB PDB    PDBbind5GP
5km1RCSB PDB    PDBbind5GP
5y61RCSB PDB    PDBbind5GP
5y62RCSB PDB    PDBbind5GP
6mxcRCSB PDB    PDBbind5GP
6hgsRCSB PDB    PDBbind5GP

Entry Information
PDB ID3kyf
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NamePutative uncharacterized protein PP4397
Ligand Name5GP
EC.Number E.C.-.-.-.-
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=165.0nM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) J.Mol.Biol. Vol. 398: pp. 97-110
Ligand Properties
Formula C10H15N5O7P
Molecular Weight 348.229
Exact Mass 348.071
No. of atoms 38
No. of bonds 40
Polar Surface Area 203.81
LOGP Value -2.45      (Computed with XLOGP3)
-2.45      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q88EQ6  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

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