Browse entries in the PDBbind-CN Database

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Related entries of code: 3bv9
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1ad8RCSB PDB    PDBbind259aa, >1AD8_2|Chain... at 100%
1awfRCSB PDB    PDBbind259aa, >1AWF_2|Chain... at 100%
1awhRCSB PDB    PDBbind259aa, >1AWH_2|Chains... at 100%
1bhxRCSB PDB    PDBbind105aa, >1BHX_3|Chain... at 100%
1c1uRCSB PDB    PDBbind259aa, >1C1U_2|Chain... at 100%
1c1vRCSB PDB    PDBbind11aa, >1C1V_3|Chain... at 90%
1c5nRCSB PDB    PDBbind259aa, >1C5N_2|Chain... at 100%
1c5oRCSB PDB    PDBbind259aa, >1C5O_2|Chain... at 100%
1d6wRCSB PDB    PDBbind287aa, >1D6W_1|Chain... at 100%
1d9iRCSB PDB    PDBbind288aa, >1D9I_1|Chain... at 100%
1dojRCSB PDB    PDBbind11aa, >1DOJ_2|Chain... at 90%
1dwcRCSB PDB    PDBbind11aa, >1DWC_3|Chain... at 90%
1dwdRCSB PDB    PDBbind11aa, >1DWD_3|Chain... at 90%
1eb1RCSB PDB    PDBbind27aa, >1EB1_3|Chain... at 100%
1g30RCSB PDB    PDBbind11aa, >1G30_3|Chain... at 90%
1g32RCSB PDB    PDBbind11aa, >1G32_3|Chain... at 90%
1g37RCSB PDB    PDBbind287aa, >1G37_1|Chain... at 100%
1ghvRCSB PDB    PDBbind11aa, >1GHV_3|Chain... at 90%
1ghwRCSB PDB    PDBbind11aa, >1GHW_3|Chain... at 90%
1ghyRCSB PDB    PDBbind257aa, >1GHY_2|Chain... at 100%
1gj4RCSB PDB    PDBbind11aa, >1GJ4_3|Chain... at 90%
1gj5RCSB PDB    PDBbind11aa, >1GJ5_3|Chain... at 90%
1hgtRCSB PDB    PDBbind259aa, >1HGT_2|Chain... at 100%
1jwtRCSB PDB    PDBbind305aa, >1JWT_1|Chain... *
1kttRCSB PDB    PDBbind259aa, >1KTT_2|Chain... at 100%
1mu6RCSB PDB    PDBbind11aa, >1MU6_3|Chain... at 90%
1mu8RCSB PDB    PDBbind11aa, >1MU8_3|Chain... at 90%
1mueRCSB PDB    PDBbind11aa, >1MUE_3|Chain... at 90%
1nm6RCSB PDB    PDBbind11aa, >1NM6_2|Chain... at 90%
1no9RCSB PDB    PDBbind11aa, >1NO9_3|Chain... at 90%
1ny2RCSB PDB    PDBbind259aa, >1NY2_2|Chain... at 100%
1o2gRCSB PDB    PDBbind259aa, >1O2G_2|Chain... at 100%
1o5gRCSB PDB    PDBbind259aa, >1O5G_2|Chain... at 100%
1qbvRCSB PDB    PDBbind11aa, >1QBV_3|Chain... at 90%
1qhrRCSB PDB    PDBbind259aa, >1QHR_2|Chain... at 100%
1qj1RCSB PDB    PDBbind259aa, >1QJ1_2|Chain... at 100%
1qj6RCSB PDB    PDBbind259aa, >1QJ6_2|Chain... at 100%
1qj7RCSB PDB    PDBbind259aa, >1QJ7_2|Chain... at 100%
1riwRCSB PDB    PDBbind11aa, >1RIW_4|Chain... at 90%
1sb1RCSB PDB    PDBbind258aa, >1SB1_2|Chain... at 100%
1sl3RCSB PDB    PDBbind11aa, >1SL3_2|Chain... at 90%
1t4vRCSB PDB    PDBbind11aa, >1T4V_3|Chain... at 90%
1tomRCSB PDB    PDBbind12aa, >1TOM_3|Chain... at 91%
1uvsRCSB PDB    PDBbind259aa, >1UVS_2|Chain... at 100%
1vr1RCSB PDB    PDBbind261aa, >1VR1_2|Chain... at 96%
1vzqRCSB PDB    PDBbind27aa, >1VZQ_3|Chain... at 100%
1w7gRCSB PDB    PDBbind12aa, >1W7G_2|Chain... at 91%
1wayRCSB PDB    PDBbind259aa, >1WAY_2|Chain... at 100%
1wbgRCSB PDB    PDBbind259aa, >1WBG_2|Chain... at 99%
1ypeRCSB PDB    PDBbind257aa, >1YPE_2|Chain... at 100%
1ypgRCSB PDB    PDBbind257aa, >1YPG_2|Chain... at 100%
1ypjRCSB PDB    PDBbind257aa, >1YPJ_2|Chain... at 100%
1z71RCSB PDB    PDBbind11aa, >1Z71_2|Chain... at 90%
1zgiRCSB PDB    PDBbind287aa, >1ZGI_1|Chain... at 100%
1zgvRCSB PDB    PDBbind287aa, >1ZGV_1|Chain... at 100%
2anmRCSB PDB    PDBbind36aa, >2ANM_2|Chain... at 100%
2bdyRCSB PDB    PDBbind289aa, >2BDY_1|Chain... at 100%
2bvsRCSB PDB    PDBbind36aa, >2BVS_3|Chain... at 100%
2bvxRCSB PDB    PDBbind36aa, >2BVX_3|Chain... at 100%
2bxtRCSB PDB    PDBbind36aa, >2BXT_3|Chain... at 100%
2bxuRCSB PDB    PDBbind36aa, >2BXU_3|Chain... at 100%
2gdeRCSB PDB    PDBbind259aa, >2GDE_2|Chain... at 100%
2h9tRCSB PDB    PDBbind259aa, >2H9T_2|Chain... at 100%
2jh0RCSB PDB    PDBbind259aa, >2JH0_2|Chain... at 100%
2jh5RCSB PDB    PDBbind259aa, >2JH5_2|Chain... at 100%
2jh6RCSB PDB    PDBbind36aa, >2JH6_1|Chain... at 100%
2pksRCSB PDB    PDBbind102aa, >2PKS_3|Chain... at 100%
2r2mRCSB PDB    PDBbind11aa, >2R2M_3|Chain... at 90%
2zc9RCSB PDB    PDBbind11aa, >2ZC9_3|Chain... at 90%
2zdaRCSB PDB    PDBbind11aa, >2ZDA_3|Chain... at 90%
2zfpRCSB PDB    PDBbind11aa, >2ZFP_3|Chain... at 90%
2zgxRCSB PDB    PDBbind259aa, >2ZGX_2|Chain... at 100%
2zo3RCSB PDB    PDBbind259aa, >2ZO3_2|Chain... at 100%
3c1kRCSB PDB    PDBbind11aa, >3C1K_2|Chain... at 90%
3da9RCSB PDB    PDBbind259aa, >3DA9_2|Chain... at 100%
3dhkRCSB PDB    PDBbind259aa, >3DHK_2|Chain... at 100%
3duxRCSB PDB    PDBbind11aa, >3DUX_3|Chain... at 90%
3egkRCSB PDB    PDBbind36aa, >3EGK_1|Chain... at 100%
3f68RCSB PDB    PDBbind11aa, >3F68_3|Chain... at 90%
3po1RCSB PDB    PDBbind147aa, >3PO1_2|Chain... at 100%
3utuRCSB PDB    PDBbind11aa, >3UTU_3|Chain... at 90%
4ax9RCSB PDB    PDBbind28aa, >4AX9_3|Chain... at 100%
4ayvRCSB PDB    PDBbind257aa, >4AYV_2|Chain... at 100%
4ayyRCSB PDB    PDBbind257aa, >4AYY_2|Chain... at 100%
4az2RCSB PDB    PDBbind11aa, >4AZ2_3|Chain... at 90%
4baoRCSB PDB    PDBbind259aa, >4BAO_2|Chain... at 100%
4e7rRCSB PDB    PDBbind259aa, >4E7R_2|Chains... at 100%
4hfpRCSB PDB    PDBbind259aa, >4HFP_2|Chains... at 99%
4loyRCSB PDB    PDBbind27aa, >4LOY_3|Chain... at 100%
4rn6RCSB PDB    PDBbind290aa, >4RN6_1|Chains... at 99%
7kmeRCSB PDB    PDBbind259aa, >7KME_2|Chain... at 100%
6gweRCSB PDB    PDBbind30aa, >6GWE_4|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1a7cRCSB PDB    PDBbind6-mer
1elrRCSB PDB    PDBbind6-mer
1guiRCSB PDB    PDBbind6-mer
1gvxRCSB PDB    PDBbind6-mer
1gwmRCSB PDB    PDBbind6-mer
1k9rRCSB PDB    PDBbind6-mer
1lybRCSB PDB    PDBbind6-mer
1njtRCSB PDB    PDBbind6-mer
1okvRCSB PDB    PDBbind6-mer
1ol1RCSB PDB    PDBbind6-mer
1ol2RCSB PDB    PDBbind6-mer
1q4kRCSB PDB    PDBbind6-mer
1rhkRCSB PDB    PDBbind6-mer
1sldRCSB PDB    PDBbind6-mer
1smeRCSB PDB    PDBbind6-mer
1strRCSB PDB    PDBbind6-mer
1urcRCSB PDB    PDBbind6-mer
1xt3RCSB PDB    PDBbind6-mer
1ym2RCSB PDB    PDBbind6-mer
1zfpRCSB PDB    PDBbind6-mer
2h65RCSB PDB    PDBbind6-mer
2h6tRCSB PDB    PDBbind6-mer
2hobRCSB PDB    PDBbind6-mer
2itkRCSB PDB    PDBbind6-mer
2l65RCSB PDB    PDBbind6-mer
2oqsRCSB PDB    PDBbind6-mer
2q6fRCSB PDB    PDBbind6-mer
2qzxRCSB PDB    PDBbind6-mer
2r0zRCSB PDB    PDBbind6-mer
2w76RCSB PDB    PDBbind6-mer
2x6xRCSB PDB    PDBbind6-mer
3avzRCSB PDB    PDBbind6-mer
3aw0RCSB PDB    PDBbind6-mer
3driRCSB PDB    PDBbind6-mer
3eysRCSB PDB    PDBbind6-mer
3fv3RCSB PDB    PDBbind6-mer
3fwvRCSB PDB    PDBbind6-mer
3h6zRCSB PDB    PDBbind6-mer
3hikRCSB PDB    PDBbind6-mer
3iquRCSB PDB    PDBbind6-mer
3iqvRCSB PDB    PDBbind6-mer
3kd7RCSB PDB    PDBbind6-mer
3luoRCSB PDB    PDBbind6-mer
3nthRCSB PDB    PDBbind6-mer
3oldRCSB PDB    PDBbind6-mer
3pslRCSB PDB    PDBbind6-mer
3q4jRCSB PDB    PDBbind6-mer
3q4kRCSB PDB    PDBbind6-mer
3q4lRCSB PDB    PDBbind6-mer
3r5jRCSB PDB    PDBbind6-mer
3r6gRCSB PDB    PDBbind6-mer
3rjmRCSB PDB    PDBbind6-mer
3sm1RCSB PDB    PDBbind6-mer
3snaRCSB PDB    PDBbind6-mer
3snbRCSB PDB    PDBbind6-mer
3sncRCSB PDB    PDBbind6-mer
3sndRCSB PDB    PDBbind6-mer
3u51RCSB PDB    PDBbind6-mer
3ux0RCSB PDB    PDBbind6-mer
3wqwRCSB PDB    PDBbind6-mer
3zmtRCSB PDB    PDBbind6-mer
3zmuRCSB PDB    PDBbind6-mer
3zmvRCSB PDB    PDBbind6-mer
3zmzRCSB PDB    PDBbind6-mer
3zn0RCSB PDB    PDBbind6-mer
3zn1RCSB PDB    PDBbind6-mer
4a0jRCSB PDB    PDBbind6-mer
4apoRCSB PDB    PDBbind6-mer
4b3bRCSB PDB    PDBbind6-mer
4b4qRCSB PDB    PDBbind6-mer
4b8yRCSB PDB    PDBbind6-mer
4c4nRCSB PDB    PDBbind6-mer
4dgbRCSB PDB    PDBbind6-mer
4er2RCSB PDB    PDBbind6-mer
4exhRCSB PDB    PDBbind6-mer
4fr3RCSB PDB    PDBbind6-mer
4fysRCSB PDB    PDBbind6-mer
4fz3RCSB PDB    PDBbind6-mer
4gyeRCSB PDB    PDBbind6-mer
4gzfRCSB PDB    PDBbind6-mer
4ifiRCSB PDB    PDBbind6-mer
4iknRCSB PDB    PDBbind6-mer
4j09RCSB PDB    PDBbind6-mer
4j77RCSB PDB    PDBbind6-mer
4j79RCSB PDB    PDBbind6-mer
4j86RCSB PDB    PDBbind6-mer
4j8bRCSB PDB    PDBbind6-mer
4jj7RCSB PDB    PDBbind6-mer
4jj8RCSB PDB    PDBbind6-mer
4jjeRCSB PDB    PDBbind6-mer
4jr0RCSB PDB    PDBbind6-mer
4k3oRCSB PDB    PDBbind6-mer
4k3pRCSB PDB    PDBbind6-mer
4k3qRCSB PDB    PDBbind6-mer
4k3rRCSB PDB    PDBbind6-mer
4ny3RCSB PDB    PDBbind6-mer
4o9wRCSB PDB    PDBbind6-mer
4ou3RCSB PDB    PDBbind6-mer
4tszRCSB PDB    PDBbind6-mer
4tt2RCSB PDB    PDBbind6-mer
4wk2RCSB PDB    PDBbind6-mer
4wvtRCSB PDB    PDBbind6-mer
4x9rRCSB PDB    PDBbind6-mer
4x9vRCSB PDB    PDBbind6-mer
4ynlRCSB PDB    PDBbind6-mer
5a2iRCSB PDB    PDBbind6-mer
5a2jRCSB PDB    PDBbind6-mer
5a2kRCSB PDB    PDBbind6-mer
5e1bRCSB PDB    PDBbind6-mer
5e1dRCSB PDB    PDBbind6-mer
5e1mRCSB PDB    PDBbind6-mer
5e1oRCSB PDB    PDBbind6-mer
5epkRCSB PDB    PDBbind6-mer
5eplRCSB PDB    PDBbind6-mer
5eq0RCSB PDB    PDBbind6-mer
5fotRCSB PDB    PDBbind6-mer
5fouRCSB PDB    PDBbind6-mer
5fovRCSB PDB    PDBbind6-mer
5fowRCSB PDB    PDBbind6-mer
5foxRCSB PDB    PDBbind6-mer
5fpkRCSB PDB    PDBbind6-mer
5gwzRCSB PDB    PDBbind6-mer
5hvpRCSB PDB    PDBbind6-mer
5izfRCSB PDB    PDBbind6-mer
5l7kRCSB PDB    PDBbind6-mer
5lrgRCSB PDB    PDBbind6-mer
5lrjRCSB PDB    PDBbind6-mer
5lrkRCSB PDB    PDBbind6-mer
5lsoRCSB PDB    PDBbind6-mer
5tpcRCSB PDB    PDBbind6-mer
5w94RCSB PDB    PDBbind6-mer
5y24RCSB PDB    PDBbind6-mer
6aprRCSB PDB    PDBbind6-mer
6aszRCSB PDB    PDBbind6-mer
6at0RCSB PDB    PDBbind6-mer
6cdgRCSB PDB    PDBbind6-mer
6cgtRCSB PDB    PDBbind6-mer
6do4RCSB PDB    PDBbind6-mer
6do5RCSB PDB    PDBbind6-mer
6dubRCSB PDB    PDBbind6-mer
6eqxRCSB PDB    PDBbind6-mer
7hvpRCSB PDB    PDBbind6-mer
6rheRCSB PDB    PDBbind6-mer
6nsxRCSB PDB    PDBbind6-mer
6nsvRCSB PDB    PDBbind6-mer
6jijRCSB PDB    PDBbind6-mer
6im4RCSB PDB    PDBbind6-mer
6hzdRCSB PDB    PDBbind6-mer
6hzcRCSB PDB    PDBbind6-mer
6hp5RCSB PDB    PDBbind6-mer
6hmyRCSB PDB    PDBbind6-mer
6hleRCSB PDB    PDBbind6-mer
6fvoRCSB PDB    PDBbind6-mer
6fvnRCSB PDB    PDBbind6-mer
6fvmRCSB PDB    PDBbind6-mer
6fvlRCSB PDB    PDBbind6-mer
6efkRCSB PDB    PDBbind6-mer
6a30RCSB PDB    PDBbind6-mer
5zw6RCSB PDB    PDBbind6-mer
5zvwRCSB PDB    PDBbind6-mer

Entry Information
PDB ID3bv9
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameThrombin
Ligand Name6-mer
EC.Number E.C.3.4.21.5
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Ki=4.4uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Thromb.Haemost. Vol. 6: pp. 837-845
Ligand Properties
Formula C33H51N9O5
Molecular Weight 653.815
Exact Mass 653.401
No. of atoms 98
No. of bonds 101
Polar Surface Area 235.56
LOGP Value 2.51      (Computed with XLOGP3)
-0.21      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 14
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00734  
Entrez Gene IDNCBI Entrez Gene ID: 2147  
ASDInformation of known allosteric effects of PDB entries

 
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