Browse entries in the PDBbind-CN Database

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Related entries of code: 3c39
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1kf0RCSB PDB    PDBbind416aa, >1KF0_1|Chain... at 96%
1vjcRCSB PDB    PDBbind416aa, >1VJC_1|Chain... at 97%
1vjdRCSB PDB    PDBbind416aa, >1VJD_1|Chain... at 97%
4o3fRCSB PDB    PDBbind417aa, >4O3F_1|Chain... at 97%
5np8RCSB PDB    PDBbind420aa, >5NP8_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1iihRCSB PDB    PDBbind3PG
3fjgRCSB PDB    PDBbind3PG
4gwkRCSB PDB    PDBbind3PG

Entry Information
PDB ID3c39
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein Namehuman phosphoglycerate kinase
Ligand Name3PG
EC.Number E.C.2.7.2.3
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)Kd=109uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (1998) Bioorg. Med. Chem. Lett., Vol.8, pp.2603-2608
Ligand Properties
Formula C3H8O7P
Molecular Weight 187.065
Exact Mass 187.001
No. of atoms 19
No. of bonds 18
Polar Surface Area 141.04
LOGP Value -1.89      (Computed with XLOGP3)
-1.90      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P00558  
Entrez Gene IDNCBI Entrez Gene ID: 5230  
ASDInformation of known allosteric effects of PDB entries

 
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