Browse entries in the PDBbind-CN Database

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Related entries of code: 3dp4
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3dlnRCSB PDB    PDBbind278aa, >3DLN_1|Chain... *
3fasRCSB PDB    PDBbind260aa, >3FAS_1|Chains... at 90%
3fatRCSB PDB    PDBbind260aa, >3FAT_1|Chains... at 90%
3rt6RCSB PDB    PDBbind258aa, >3RT6_1|Chain... at 100%
3rt8RCSB PDB    PDBbind258aa, >3RT8_1|Chain... at 100%
4f39RCSB PDB    PDBbind258aa, >4F39_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1ftmRCSB PDB    PDBbindAMQ
1my2RCSB PDB    PDBbindAMQ
1p1qRCSB PDB    PDBbindAMQ
3fatRCSB PDB    PDBbindAMQ

Entry Information
PDB ID3dp4
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGlutamate receptor 3(S1S2 binding domain)
Ligand NameAMQ
EC.Number E.C.-.-.-.-
Resolution 2.11(Å)
Affinity (Kd/Ki/IC50)Kd=43nM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) Proteins Vol. 75: pp. 628-637
Ligand Properties
Formula C7H11N2O4
Molecular Weight 187.173
Exact Mass 187.072
No. of atoms 24
No. of bonds 24
Polar Surface Area 110.94
LOGP Value -2.34      (Computed with XLOGP3)
-1.49      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 6
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P19492  
Entrez Gene IDNCBI Entrez Gene ID: 29628  
ASDInformation of known allosteric effects of PDB entries

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