Browse entries in the PDBbind-CN Database

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Related entries of code: 3eks
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1h1vRCSB PDB    PDBbind375aa, >1H1V_1|Chain... at 92%
1kxpRCSB PDB    PDBbind375aa, >1KXP_1|Chain... at 92%
2fxuRCSB PDB    PDBbind375aa, >2FXU_1|Chain... at 92%
4eahRCSB PDB    PDBbind377aa, >4EAH_1|Chains... at 93%
4k42RCSB PDB    PDBbind375aa, >4K42_1|Chains... at 92%
4k43RCSB PDB    PDBbind375aa, >4K43_1|Chains... at 92%
4rwtRCSB PDB    PDBbind384aa, >4RWT_1|Chains... *
6qriRCSB PDB    PDBbind377aa, >6QRI_1|Chains... at 93%
6ox0RCSB PDB    PDBbind15aa, >6OX0_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3eks
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameActin-5C
Ligand NameCY9
EC.Number E.C.-.-.-.-
Resolution 1.8(Å)
Affinity (Kd/Ki/IC50)Kd=2uM
Release Year2008
Protein/NA SequenceCheck fasta file
Primary Reference (2008) J.Mol.Biol. Vol. 384: pp. 848-864
Ligand Properties
Formula C30H37NO6
Molecular Weight 507.618
Exact Mass 507.262
No. of atoms 74
No. of bonds 77
Polar Surface Area 112.93
LOGP Value 2.75      (Computed with XLOGP3)
3.25      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P10987  
Entrez Gene IDNCBI Entrez Gene ID: 31521  
ASDInformation of known allosteric effects of PDB entries
 
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