Browse entries in the PDBbind-CN Database

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Related entries of code: 3g3d
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2qcdRCSB PDB    PDBbind260aa, >2QCD_2|Chain... at 98%
2qcfRCSB PDB    PDBbind260aa, >2QCF_1|Chain... at 98%
2qcgRCSB PDB    PDBbind260aa, >2QCG_1|Chains... at 98%
2qchRCSB PDB    PDBbind260aa, >2QCH_1|Chains... at 98%
2qcmRCSB PDB    PDBbind260aa, >2QCM_1|Chain... at 98%
2qcnRCSB PDB    PDBbind260aa, >2QCN_1|Chains... at 98%
3ewuRCSB PDB    PDBbind260aa, >3EWU_1|Chains... at 98%
3ewzRCSB PDB    PDBbind260aa, >3EWZ_1|Chains... at 98%
3ex2RCSB PDB    PDBbind260aa, >3EX2_1|Chains... at 98%
3ex3RCSB PDB    PDBbind260aa, >3EX3_1|Chains... at 98%
3ex6RCSB PDB    PDBbind260aa, >3EX6_1|Chains... at 98%
3g3mRCSB PDB    PDBbind279aa, >3G3M_1|Chain... at 92%
3l0kRCSB PDB    PDBbind260aa, >3L0K_1|Chains... at 98%
3l0nRCSB PDB    PDBbind260aa, >3L0N_1|Chains... at 98%
3mi2RCSB PDB    PDBbind279aa, >3MI2_1|Chains... at 92%
4hkpRCSB PDB    PDBbind312aa, >4HKP_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2qcfRCSB PDB    PDBbind5FU
3g1vRCSB PDB    PDBbind5FU
3g3mRCSB PDB    PDBbind5FU
Entry Information
PDB ID3g3d
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameHuman Orotidine 5-monophosphate Decarboxylase
Ligand Name5FU
EC.Number E.C.4.1.1.23
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Ki=18.2uM
Release Year2009
Protein/NA SequenceCheck fasta file
Primary Reference (2009) J.Med.Chem. Vol. 52: pp. 1648-1658
Ligand Properties
Formula C9H13FN2O9P
Molecular Weight 343.180
Exact Mass 343.034
No. of atoms 35
No. of bonds 36
Polar Surface Area 188.06
LOGP Value -3.80      (Computed with XLOGP3)
-3.03      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 11
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P11172  
Entrez Gene IDNCBI Entrez Gene ID: 7372  
ASDInformation of known allosteric effects of PDB entries
 
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