Browse entries in the PDBbind-CN Database

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Related entries of code: 3nm6
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4ffsRCSB PDB    PDBbind239aa, >4FFS_1|Chain... at 98%
4wknRCSB PDB    PDBbind245aa, >4WKN_1|Chain... *
4wkoRCSB PDB    PDBbind245aa, >4WKO_1|Chain... at 100%
4wkpRCSB PDB    PDBbind245aa, >4WKP_1|Chains... at 100%
4ynbRCSB PDB    PDBbind245aa, >4YNB_1|Chain... at 100%
4yo8RCSB PDB    PDBbind245aa, >4YO8_1|Chains... at 100%
6dyyRCSB PDB    PDBbind245aa, >6DYY_1|Chains... at 100%
6dywRCSB PDB    PDBbind245aa, >6DYW_1|Chains... at 100%
6dyvRCSB PDB    PDBbind245aa, >6DYV_1|Chains... at 100%
6dyuRCSB PDB    PDBbind245aa, >6DYU_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1h4nRCSB PDB    PDBbindTRS
1htyRCSB PDB    PDBbindTRS

Entry Information
PDB ID3nm6
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMTA/SAH nucleosidase(Helicobacter pylori MTAN)
Ligand NameTRS
EC.Number E.C.
Resolution 1.6(Å)
Affinity (Kd/Ki/IC50)Kd=45mM
Release Year2010
Protein/NA SequenceCheck fasta file
Primary Reference (2010) Protein Sci. Vol. 19: pp. 2498-2510
Ligand Properties
Formula C4H12NO3
Molecular Weight 122.143
Exact Mass 122.082
No. of atoms 20
No. of bonds 19
Polar Surface Area 88.33
LOGP Value -2.88      (Computed with XLOGP3)
-3.06      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 4
No. of Rings: 0
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9ZMY2  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

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