Browse entries in the PDBbind-CN Database

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Related entries of code: 3qxm
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1s50RCSB PDB    PDBbind259aa, >1S50_1|Chain... at 100%
1s9tRCSB PDB    PDBbind259aa, >1S9T_1|Chains... at 100%
1tt1RCSB PDB    PDBbind259aa, >1TT1_1|Chains... at 100%
2xxrRCSB PDB    PDBbind261aa, >2XXR_1|Chains... *
2xxtRCSB PDB    PDBbind261aa, >2XXT_1|Chains... at 100%
2xxwRCSB PDB    PDBbind261aa, >2XXW_1|Chains... at 99%
2xxxRCSB PDB    PDBbind261aa, >2XXX_1|Chains... at 99%
2xxyRCSB PDB    PDBbind261aa, >2XXY_1|Chains... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2znuRCSB PDB    PDBbindNDZ
3fv2RCSB PDB    PDBbindNDZ
Entry Information
PDB ID3qxm
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameGlutamate receptor, ionotropic kainate 2
Ligand NameNDZ
EC.Number E.C.-.-.-.-
Resolution 1.65(Å)
Affinity (Kd/Ki/IC50)Ki=33nM
Release Year2011
Protein/NA SequenceCheck fasta file
Primary Reference (2011) J.Mol.Biol. Vol. 413: pp. 667-683
Ligand Properties
Formula C11H18NO8
Molecular Weight 292.263
Exact Mass 292.103
No. of atoms 38
No. of bonds 39
Polar Surface Area 161.16
LOGP Value -3.28      (Computed with XLOGP3)
-3.20      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q13002  
Entrez Gene IDNCBI Entrez Gene ID: 2898  
ASDInformation of known allosteric effects of PDB entries
 
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