Browse entries in the PDBbind-CN Database

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Related entries of code: 3r5m
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3nsqRCSB PDB    PDBbind240aa, >3NSQ_1|Chains... at 100%
3pcuRCSB PDB    PDBbind230aa, >3PCU_1|Chain... at 100%
4n5gRCSB PDB    PDBbind244aa, >4N5G_1|Chains... at 98%
4n8rRCSB PDB    PDBbind244aa, >4N8R_1|Chains... at 98%
5mkjRCSB PDB    PDBbind230aa, >5MKJ_1|Chain... at 100%
5tbpRCSB PDB    PDBbind244aa, >5TBP_1|Chains... at 98%
6jnoRCSB PDB    PDBbind243aa, >6JNO_1|Chains... at 98%
5zquRCSB PDB    PDBbind243aa, >5ZQU_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3r5nRCSB PDB    PDBbindMLO

Entry Information
PDB ID3r5m
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRetinoic acid receptor RXR-alpha
Ligand NameMLO
EC.Number E.C.-.-.-.-
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)Kd=45.7uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2011) Plos One Vol. 6: pp. e28253-e28253
Ligand Properties
Formula C18H18O2
Molecular Weight 266.334
Exact Mass 266.131
No. of atoms 38
No. of bonds 39
Polar Surface Area 40.46
LOGP Value 4.92      (Computed with XLOGP3)
4.53      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 6
No. of Nitrogen and Oxygen Atoms: 2
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P19793  Q15596  
Entrez Gene IDNCBI Entrez Gene ID: 6256  10499  
ASDInformation of known allosteric effects of PDB entries

 
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