Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 3s9y
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2q8zRCSB PDB    PDBbind342aa, >2Q8Z_1|Chains... *
2qafRCSB PDB    PDBbind342aa, >2QAF_1|Chains... at 100%
2za3RCSB PDB    PDBbind323aa, >2ZA3_1|Chains... at 100%
3barRCSB PDB    PDBbind342aa, >3BAR_1|Chains... at 100%
3vi2RCSB PDB    PDBbind323aa, >3VI2_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3s9y
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameOrotidine 5'-phosphate decarboxylase
Ligand NameFNU
EC.Number E.C.4.1.1.23
Resolution 1.7(Å)
Affinity (Kd/Ki/IC50)Ki=0.36uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2009) J.Med.Chem. Vol. 52: pp. 1648-1658
Ligand Properties
Formula C9H14FN3O9P
Molecular Weight 358.194
Exact Mass 358.045
No. of atoms 37
No. of bonds 38
Polar Surface Area 214.08
LOGP Value -4.27      (Computed with XLOGP3)
-2.87      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 7
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 12
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q8IJH3  
Entrez Gene IDNCBI Entrez Gene ID: 810382  
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2024    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com