Browse entries in the PDBbind-CN Database

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Related entries of code: 3zdv
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2bojRCSB PDB    PDBbind114aa, >2BOJ_1|Chains... at 100%
2jdhRCSB PDB    PDBbind115aa, >2JDH_1|Chains... *
2jdkRCSB PDB    PDBbind115aa, >2JDK_1|Chains... at 100%
2jdmRCSB PDB    PDBbind115aa, >2JDM_1|Chains... at 99%
2jdnRCSB PDB    PDBbind115aa, >2JDN_1|Chains... at 99%
2jdpRCSB PDB    PDBbind115aa, >2JDP_1|Chains... at 99%
2jduRCSB PDB    PDBbind115aa, >2JDU_1|Chains... at 99%
2jdyRCSB PDB    PDBbind115aa, >2JDY_1|Chains... at 99%
3dcqRCSB PDB    PDBbind114aa, >3DCQ_1|Chains... at 100%
5a3oRCSB PDB    PDBbind114aa, >5A3O_1|Chains... at 100%
5d2aRCSB PDB    PDBbind114aa, >5D2A_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID3zdv
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameFUCOSE-BINDING LECTIN PA-IIL
Ligand NameF1A-MMA
EC.Number E.C.-.-.-.-
Resolution 1.41(Å)
Affinity (Kd/Ki/IC50)Kd=3.3uM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Acs Chem.Biol. Vol. 8: pp. 1775
Ligand Properties
Formula C16H25NO7S
Molecular Weight 375.437
Exact Mass 375.135
No. of atoms 50
No. of bonds 51
Polar Surface Area 133.7
LOGP Value 0.39      (Computed with XLOGP3)
0.82      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 8
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9HYN5  
Entrez Gene IDNCBI Entrez Gene ID: 882528  
ASDInformation of known allosteric effects of PDB entries
 
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