Browse entries in the PDBbind-CN Database

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Related entries of code: 4emr
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4emfRCSB PDB    PDBbind246aa, >4EMF_1|Chain... *
4i47RCSB PDB    PDBbind246aa, >4I47_1|Chain... at 100%
4zt8RCSB PDB    PDBbind246aa, >4ZT8_1|Chain... at 100%
5csoRCSB PDB    PDBbind246aa, >5CSO_1|Chain... at 100%
5cstRCSB PDB    PDBbind246aa, >5CST_1|Chain... at 100%
5y48RCSB PDB    PDBbind246aa, >5Y48_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3ctrRCSB PDB    PDBbindMGP

Entry Information
PDB ID4emr
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NamerRNA N-glycosidase
Ligand NameMGP
EC.Number E.C.3.2.2.22
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Kd=32.1nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Proteins Vol. 81: pp. 896-905
Ligand Properties
Formula C11H23N5O14P3
Molecular Weight 542.247
Exact Mass 542.045
No. of atoms 56
No. of bonds 58
Polar Surface Area 342.64
LOGP Value -5.48      (Computed with XLOGP3)
-3.43      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 19
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D9J2T9  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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