Browse entries in the PDBbind-CN Database

Display Options: Structure:  

Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4jvb
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
3t5iRCSB PDB    PDBbind152aa, >3T5I_1|Chains... *
4jv6RCSB PDB    PDBbind152aa, >4JV6_1|Chain... at 100%
4jv8RCSB PDB    PDBbind152aa, >4JV8_1|Chain... at 100%
5e80RCSB PDB    PDBbind149aa, >5E80_1|Chains... at 99%
5e8fRCSB PDB    PDBbind149aa, >5E8F_1|Chains... at 100%
5f2uRCSB PDB    PDBbind149aa, >5F2U_1|Chains... at 100%
5ml2RCSB PDB    PDBbind149aa, >5ML2_1|Chain... at 100%
5ml3RCSB PDB    PDBbind149aa, >5ML3_1|Chain... at 100%
5ml4RCSB PDB    PDBbind149aa, >5ML4_1|Chain... at 100%
5ml6RCSB PDB    PDBbind149aa, >5ML6_1|Chain... at 100%
5ml8RCSB PDB    PDBbind149aa, >5ML8_1|Chain... at 100%
5tarRCSB PDB    PDBbind148aa, >5TAR_2|Chain... at 100%
5x72RCSB PDB    PDBbind150aa, >5X72_1|Chain... at 100%
5x73RCSB PDB    PDBbind150aa, >5X73_1|Chain... at 100%
5x74RCSB PDB    PDBbind150aa, >5X74_1|Chain... at 99%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4jvb
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Ligand Name1M0
EC.Number E.C.-.-.-.-
Resolution 1.75(Å)
Affinity (Kd/Ki/IC50)Kd=39nM
Release Year2013
Protein/NA SequenceCheck fasta file
Primary Reference (2013) Nature Vol. 497: pp. 638-642
Ligand Properties
Formula C38H34N4O
Molecular Weight 562.703
Exact Mass 562.273
No. of atoms 77
No. of bonds 83
Polar Surface Area 44.87
LOGP Value 8.76      (Computed with XLOGP3)
9.19      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 0
No. of Hydrogen Bond Acceptors: 2
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 7
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): O43924  
Entrez Gene IDNCBI Entrez Gene ID: 5147  
ASDInformation of known allosteric effects of PDB entries

This site has been visited times since Nov 2007.

Copyright ©2007-2023    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝e湪鐢宠涓

Technical Support锛堟妧鏈敮鎸侊級: