Browse entries in the PDBbind-CN Database

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Related entries of code: 4ad2
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4ad3RCSB PDB    PDBbind380aa, >4AD3_1|Chains... at 96%
4v27RCSB PDB    PDBbind380aa, >4V27_1|Chain... at 96%
5lyrRCSB PDB    PDBbind385aa, >5LYR_1|Chain... *
5m17RCSB PDB    PDBbind385aa, >5M17_1|Chain... at 100%
5m5dRCSB PDB    PDBbind385aa, >5M5D_1|Chain... at 100%
6famRCSB PDB    PDBbind385aa, >6FAM_1|Chain... at 100%
6hmgRCSB PDB    PDBbind385aa, >6HMG_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID4ad2
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameGH99 endo-alpha-mannosidase from Bacteroides xylanisolvens
Ligand NameGLC-IFM
EC.Number E.C.3.2.1.130
Resolution 2.1(Å)
Affinity (Kd/Ki/IC50)Kd=625nM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) Proc.Natl.Acad.Sci.USA Vol. 109: pp. 781
Ligand Properties
Formula C12H24NO8
Molecular Weight 310.321
Exact Mass 310.150
No. of atoms 45
No. of bonds 46
Polar Surface Area 156.45
LOGP Value -3.13      (Computed with XLOGP3)
-3.71      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 7
No. of Hydrogen Bond Acceptors: 6
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 9
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): D6D1V7  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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