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Related entries of code: 4de7
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1gwwRCSB PDB    PDBbindUDP
1gx0RCSB PDB    PDBbindUDP
1gx4RCSB PDB    PDBbindUDP
1o7oRCSB PDB    PDBbindUDP
2vl8RCSB PDB    PDBbindUDP
3djqRCSB PDB    PDBbindUDP
3dxhRCSB PDB    PDBbindUDP
4ay5RCSB PDB    PDBbindUDP
4dmwRCSB PDB    PDBbindUDP
4gz3RCSB PDB    PDBbindUDP
6eytRCSB PDB    PDBbindUDP

Entry Information
PDB ID4de7
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Ligand NameUDP
EC.Number E.C.
Resolution 3(Å)
Affinity (Kd/Ki/IC50)Kd=16uM
Release Year2012
Protein/NA SequenceCheck fasta file
Primary Reference (2012) J.Biol.Chem. Vol. 287: pp. 24649-24661
Ligand Properties
Formula C9H12N2O5
Molecular Weight 228.202
Exact Mass 228.075
No. of atoms 28
No. of bonds 29
Polar Surface Area 104.55
LOGP Value -1.80      (Computed with XLOGP3)
-1.82      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P9WMW9  
Entrez Gene IDNCBI Entrez Gene ID: 45425178  886085  
ASDInformation of known allosteric effects of PDB entries

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