Browse entries in the PDBbind-CN Database

Display Options: Structure:  




Goto PDB code:

3D presentation of molecule is powered by 3Dmol, which supports all modern browsers and mobile devices via WebGL.

           
Hold mouse button: left to rotate,middle to shift,right to zoom

Related entries of code: 4x11
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4x0zRCSB PDB    PDBbind272aa, >4X0Z_1|Chains... *
4x13RCSB PDB    PDBbind272aa, >4X13_1|Chains... at 100%
4x14RCSB PDB    PDBbind272aa, >4X14_1|Chains... at 98%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2qwbRCSB PDB    PDBbindSIA
2zg1RCSB PDB    PDBbindSIA
2zg3RCSB PDB    PDBbindSIA
3qndRCSB PDB    PDBbindSIA
4d62RCSB PDB    PDBbindSIA
4d63RCSB PDB    PDBbindSIA
4nrkRCSB PDB    PDBbindSIA
4nrlRCSB PDB    PDBbindSIA
6er3RCSB PDB    PDBbindSIA
6er4RCSB PDB    PDBbindSIA
6g47RCSB PDB    PDBbindSIA
Entry Information
PDB ID4x11
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameJC Polyomavirus genotype 3 VP1
Ligand NameSIA
EC.Number E.C.-.-.-.-
Resolution 2.3(Å)
Affinity (Kd/Ki/IC50)Kd=6mM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Virol. Vol. 89: pp. 6364-6375
Ligand Properties
Formula C11H19NO9
Molecular Weight 309.270
Exact Mass 309.106
No. of atoms 40
No. of bonds 40
Polar Surface Area 176.78
LOGP Value -2.58      (Computed with XLOGP3)
-3.48      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 8
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 10
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P90498  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
This site has been visited times since Nov 2007.


Copyright ©2007-2025    涓婃捣鐩堣禌鎬濅俊鎭鎶鏈夐檺鍏徃    缃戠珯澶囨鍙凤細娌狪CP澶2021015625鍙-3    娌叕缃戝畨澶囷細姝ｅ湪鐢宠涓


Technical Support锛堟妧鏈敮鎸侊級: yingsaisi@foxmail.com