Browse entries in the PDBbind-CN Database

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Related entries of code: 4ycl
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2agvRCSB PDB    PDBbind994aa, >2AGV_1|Chains... at 100%
2o9jRCSB PDB    PDBbind994aa, >2O9J_1|Chain... at 100%
2oa0RCSB PDB    PDBbind994aa, >2OA0_1|Chain... at 100%
3n5kRCSB PDB    PDBbind994aa, >3N5K_1|Chains... at 100%
3nalRCSB PDB    PDBbind994aa, >3NAL_1|Chain... at 100%
3namRCSB PDB    PDBbind994aa, >3NAM_1|Chain... at 100%
3nanRCSB PDB    PDBbind994aa, >3NAN_1|Chain... at 100%
4j2tRCSB PDB    PDBbind994aa, >4J2T_1|Chain... at 100%
4ycmRCSB PDB    PDBbind994aa, >4YCM_1|Chain... at 99%
4ycnRCSB PDB    PDBbind994aa, >4YCN_1|Chain... at 99%
5a3qRCSB PDB    PDBbind995aa, >5A3Q_1|Chain... at 100%
5a3rRCSB PDB    PDBbind994aa, >5A3R_1|Chain... at 100%
5a3sRCSB PDB    PDBbind995aa, >5A3S_1|Chains... at 100%
5ncqRCSB PDB    PDBbind994aa, >5NCQ_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2o9jRCSB PDB    PDBbindCZA
2oa0RCSB PDB    PDBbindCZA

Entry Information
PDB ID4ycl
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameSarcoplasmic/endoplasmic reticulum calcium ATPase 1
Ligand NameCZA
EC.Number E.C.3.6.3.8
Resolution 3.4(Å)
Affinity (Kd/Ki/IC50)Kd=7nM
Release Year2007
Protein/NA SequenceCheck fasta file
Primary Reference PNAS. 2007, 104, 5800-5805.
Ligand Properties
Formula C20H23N2O3
Molecular Weight 339.408
Exact Mass 339.171
No. of atoms 48
No. of bonds 52
Polar Surface Area 74.6
LOGP Value 2.39      (Computed with XLOGP3)
2.15      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 2
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P04191  
Entrez Gene IDNCBI Entrez Gene ID: 100037716  
ASDInformation of known allosteric effects of PDB entries

 
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