Browse entries in the PDBbind-CN Database

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Related entries of code: 4ygf
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
4yhaRCSB PDB    PDBbind234aa, >4YHA_1|Chains... at 100%
5tt3RCSB PDB    PDBbind234aa, >5TT3_1|Chains... at 100%
5tt8RCSB PDB    PDBbind234aa, >5TT8_1|Chains... at 100%
5tuoRCSB PDB    PDBbind234aa, >5TUO_1|Chains... at 100%
5tv3RCSB PDB    PDBbind234aa, >5TV3_1|Chains... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1azmRCSB PDB    PDBbindAZM
1jd0RCSB PDB    PDBbindAZM
1ydaRCSB PDB    PDBbindAZM
1ydbRCSB PDB    PDBbindAZM
1yddRCSB PDB    PDBbindAZM
1zsbRCSB PDB    PDBbindAZM
2h4nRCSB PDB    PDBbindAZM
2uy4RCSB PDB    PDBbindAZM
2xtkRCSB PDB    PDBbindAZM
3czvRCSB PDB    PDBbindAZM
3dc3RCSB PDB    PDBbindAZM
3hs4RCSB PDB    PDBbindAZM
3ml5RCSB PDB    PDBbindAZM
3ucjRCSB PDB    PDBbindAZM
4g0cRCSB PDB    PDBbindAZM
5jn8RCSB PDB    PDBbindAZM
Entry Information
PDB ID4ygf
Complex TypeProtein-Ligand
PDBbind Subsetrefined set
Protein NameHelicobacter pylori alpha-Carbonic Anhydrase
Ligand NameAZM
EC.Number E.C.-.-.-.-
Resolution 2(Å)
Affinity (Kd/Ki/IC50)Ki=21nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Plos One Vol. 10: pp. 1-13
Ligand Properties
Formula C4H6N4O3S2
Molecular Weight 222.245
Exact Mass 221.988
No. of atoms 19
No. of bonds 19
Polar Surface Area 151.66
LOGP Value -1.23      (Computed with XLOGP3)
1.00      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 3
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 1
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): A0A0M3KL20  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries
 
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