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Related entries of code: 4yv5
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5vfjRCSB PDB    PDBbind121aa, >5VFJ_1|Chains... at 95%
5vfmRCSB PDB    PDBbind121aa, >5VFM_1|Chains... at 95%
5vfnRCSB PDB    PDBbind121aa, >5VFN_1|Chains... at 95%
6dikRCSB PDB    PDBbind121aa, >6DIK_1|Chains... at 95%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
2h9tRCSB PDB    PDBbindSVR
2nyrRCSB PDB    PDBbindSVR
3pp7RCSB PDB    PDBbindSVR
3ur0RCSB PDB    PDBbindSVR
4j4vRCSB PDB    PDBbindSVR
4x3uRCSB PDB    PDBbindSVR
6ce2RCSB PDB    PDBbindSVR

Entry Information
PDB ID4yv5
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameMyotoxin II from Bothrops moojeni
Ligand NameSVR
EC.Number E.C.-.-.-.-
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)Kd=0.6uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Acta Crystallogr.,Sect.D Vol. 71: pp. 2066-2078
Ligand Properties
Formula C51H52N6O23S6
Molecular Weight 1309.370
Exact Mass 1308.140
No. of atoms 138
No. of bonds 145
Polar Surface Area 673.47
LOGP Value 2.03      (Computed with XLOGP3)
15.20      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 6
No. of Hydrogen Bond Acceptors: 23
No. of Rotatable Bonds: 16
No. of Nitrogen and Oxygen Atoms: 29
No. of Rings: 8
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9I834  
Entrez Gene IDNo matched NCBI Entrez Gene ID found!
ASDInformation of known allosteric effects of PDB entries

 
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