Browse entries in the PDBbind-CN Database

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Related entries of code: 5av0
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
2yakRCSB PDB    PDBbind285aa, >2YAK_1|Chain... at 100%
4txcRCSB PDB    PDBbind304aa, >4TXC_1|Chain... *
5autRCSB PDB    PDBbind293aa, >5AUT_1|Chain... at 97%
5auuRCSB PDB    PDBbind293aa, >5AUU_1|Chain... at 97%
5auvRCSB PDB    PDBbind293aa, >5AUV_1|Chain... at 97%
5auwRCSB PDB    PDBbind293aa, >5AUW_1|Chain... at 97%
5auxRCSB PDB    PDBbind293aa, >5AUX_1|Chain... at 97%
5auyRCSB PDB    PDBbind293aa, >5AUY_1|Chain... at 97%
5auzRCSB PDB    PDBbind293aa, >5AUZ_1|Chain... at 97%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
3l5rRCSB PDB    PDBbind47X

Entry Information
PDB ID5av0
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameDeath-associated protein kinase 1, DAPK1
Ligand Name47X
EC.Number E.C.
Resolution 1.85(Å)
Affinity (Kd/Ki/IC50)IC50=280uM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) J.Med.Chem. Vol. 58: pp. 7400-7408
Ligand Properties
Formula C15H10O5
Molecular Weight 270.237
Exact Mass 270.053
No. of atoms 30
No. of bonds 32
Polar Surface Area 90.9
LOGP Value 2.11      (Computed with XLOGP3)
2.58      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 4
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 3
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P53355  
Entrez Gene IDNCBI Entrez Gene ID: 1612  
ASDInformation of known allosteric effects of PDB entries

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