Browse entries in the PDBbind-CN Database

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Related entries of code: 5bvd
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1pmeRCSB PDB    PDBbind380aa, >1PME_1|Chain... at 96%
1tvoRCSB PDB    PDBbind368aa, >1TVO_1|Chain... at 97%
1wzyRCSB PDB    PDBbind368aa, >1WZY_1|Chain... at 97%
2ojgRCSB PDB    PDBbind380aa, >2OJG_1|Chain... at 97%
2ojiRCSB PDB    PDBbind380aa, >2OJI_1|Chain... at 97%
2ojjRCSB PDB    PDBbind380aa, >2OJJ_1|Chain... at 97%
3erkRCSB PDB    PDBbind364aa, >3ERK_1|Chain... at 100%
3i5zRCSB PDB    PDBbind380aa, >3I5Z_1|Chain... at 97%
3i60RCSB PDB    PDBbind380aa, >3I60_1|Chain... at 97%
3w55RCSB PDB    PDBbind368aa, >3W55_1|Chain... at 97%
4erkRCSB PDB    PDBbind364aa, >4ERK_1|Chain... at 100%
4i5hRCSB PDB    PDBbind359aa, >4I5H_1|Chain... at 98%
4n4sRCSB PDB    PDBbind359aa, >4N4S_1|Chains... at 98%
4o6eRCSB PDB    PDBbind368aa, >4O6E_1|Chain... at 97%
4qp1RCSB PDB    PDBbind369aa, >4QP1_1|Chains... at 98%
4qp2RCSB PDB    PDBbind369aa, >4QP2_1|Chains... at 98%
4qp6RCSB PDB    PDBbind369aa, >4QP6_1|Chains... at 98%
4qp7RCSB PDB    PDBbind369aa, >4QP7_1|Chains... at 98%
4qp8RCSB PDB    PDBbind369aa, >4QP8_1|Chains... at 98%
4qp9RCSB PDB    PDBbind369aa, >4QP9_1|Chain... at 98%
4qpaRCSB PDB    PDBbind369aa, >4QPA_1|Chains... at 98%
4qtaRCSB PDB    PDBbind361aa, >4QTA_1|Chain... at 99%
4qyyRCSB PDB    PDBbind365aa, >4QYY_1|Chain... at 99%
4xj0RCSB PDB    PDBbind349aa, >4XJ0_1|Chains... at 99%
5ax3RCSB PDB    PDBbind368aa, >5AX3_1|Chain... at 97%
5bueRCSB PDB    PDBbind361aa, >5BUE_1|Chain... at 99%
5buiRCSB PDB    PDBbind361aa, >5BUI_1|Chain... at 99%
5bujRCSB PDB    PDBbind361aa, >5BUJ_1|Chain... at 99%
5bveRCSB PDB    PDBbind361aa, >5BVE_1|Chain... at 99%
5bvfRCSB PDB    PDBbind361aa, >5BVF_1|Chain... at 99%
5k4iRCSB PDB    PDBbind352aa, >5K4I_1|Chain... at 99%
5ke0RCSB PDB    PDBbind366aa, >5KE0_1|Chain... at 99%
5lcjRCSB PDB    PDBbind368aa, >5LCJ_1|Chain... at 99%
5lckRCSB PDB    PDBbind360aa, >5LCK_1|Chain... at 99%
5nguRCSB PDB    PDBbind381aa, >5NGU_1|Chain... *
5nhfRCSB PDB    PDBbind381aa, >5NHF_1|Chain... at 100%
5nhhRCSB PDB    PDBbind381aa, >5NHH_1|Chain... at 100%
5nhjRCSB PDB    PDBbind381aa, >5NHJ_1|Chain... at 100%
5nhlRCSB PDB    PDBbind381aa, >5NHL_1|Chain... at 100%
5nhoRCSB PDB    PDBbind381aa, >5NHO_1|Chain... at 100%
5nhpRCSB PDB    PDBbind381aa, >5NHP_1|Chain... at 100%
5nhvRCSB PDB    PDBbind381aa, >5NHV_1|Chain... at 100%
6cpwRCSB PDB    PDBbind366aa, >6CPW_1|Chain... at 99%
6dcgRCSB PDB    PDBbind366aa, >6DCG_1|Chain... at 99%
6g91RCSB PDB    PDBbind368aa, >6G91_1|Chain... at 99%
6g92RCSB PDB    PDBbind368aa, >6G92_1|Chain... at 99%
6g93RCSB PDB    PDBbind368aa, >6G93_1|Chain... at 99%
6g97RCSB PDB    PDBbind368aa, >6G97_1|Chain... at 99%
6g9aRCSB PDB    PDBbind368aa, >6G9A_1|Chain... at 99%
6g9dRCSB PDB    PDBbind368aa, >6G9D_1|Chain... at 99%
6g9hRCSB PDB    PDBbind368aa, >6G9H_1|Chain... at 99%
6g9jRCSB PDB    PDBbind368aa, >6G9J_1|Chain... at 99%
6g9kRCSB PDB    PDBbind368aa, >6G9K_1|Chain... at 99%
6g9mRCSB PDB    PDBbind368aa, >6G9M_1|Chain... at 99%
6g9nRCSB PDB    PDBbind368aa, >6G9N_1|Chain... at 99%
6ge0RCSB PDB    PDBbind368aa, >6GE0_1|Chain... at 99%
6gjdRCSB PDB    PDBbind368aa, >6GJD_1|Chain... at 99%
6gjbRCSB PDB    PDBbind368aa, >6GJB_1|Chain... at 99%
6slgRCSB PDB    PDBbind381aa, >6SLG_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5bvd
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameERK2 kinase
Ligand Name4VF
EC.Number E.C.2.7.11.24
Resolution 1.9(Å)
Affinity (Kd/Ki/IC50)IC50=0.16nM
Release Year2015
Protein/NA SequenceCheck fasta file
Primary Reference (2015) Bioorg.Med.Chem.Lett. Vol. 25: pp. 3788-3792
Ligand Properties
Formula C24H26ClN5O3
Molecular Weight 467.948
Exact Mass 467.172
No. of atoms 59
No. of bonds 63
Polar Surface Area 92.51
LOGP Value 2.30      (Computed with XLOGP3)
3.39      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 2
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 7
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P28482  
Entrez Gene IDNCBI Entrez Gene ID: 5594  
ASDInformation of known allosteric effects of PDB entries
 
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