Browse entries in the PDBbind-CN Database

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Related entries of code: 5eom
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
No similar entries are found!
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
1wvcRCSB PDB    PDBbindCTP
2ad5RCSB PDB    PDBbindCTP
4wopRCSB PDB    PDBbindCTP
6cveRCSB PDB    PDBbindCTP
6e05RCSB PDB    PDBbindCTP
6e06RCSB PDB    PDBbindCTP
6pk7RCSB PDB    PDBbindCTP
6ak6RCSB PDB    PDBbindCTP

Entry Information
PDB ID5eom
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namefull-length human MAB21L1
Ligand NameCTP
EC.Number E.C.-.-.-.-
Resolution 2.55(Å)
Affinity (Kd/Ki/IC50)Kd=0.41uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Sci Rep Vol. 6: pp. 1-14
Ligand Properties
Formula C9H19N3O14P3
Molecular Weight 486.180
Exact Mass 486.008
No. of atoms 48
No. of bonds 49
Polar Surface Area 321.4
LOGP Value -6.38      (Computed with XLOGP3)
-3.60      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 10
No. of Rotatable Bonds: 9
No. of Nitrogen and Oxygen Atoms: 17
No. of Rings: 2
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q13394  
Entrez Gene IDNCBI Entrez Gene ID: 4081  
ASDInformation of known allosteric effects of PDB entries

 
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