Browse entries in the PDBbind-CN Database

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Related entries of code: 5fpu
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
5a1fRCSB PDB    PDBbind475aa, >5A1F_1|Chain... at 100%
5a3nRCSB PDB    PDBbind481aa, >5A3N_1|Chain... *
5a3tRCSB PDB    PDBbind481aa, >5A3T_1|Chain... at 100%
5a3wRCSB PDB    PDBbind481aa, >5A3W_1|Chain... at 100%
5funRCSB PDB    PDBbind481aa, >5FUN_1|Chain... at 100%
6h52RCSB PDB    PDBbind481aa, >6H52_1|Chain... at 100%
6h51RCSB PDB    PDBbind481aa, >6H51_1|Chain... at 100%
6h50RCSB PDB    PDBbind481aa, >6H50_1|Chain... at 100%
6h4zRCSB PDB    PDBbind481aa, >6H4Z_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
4askRCSB PDB    PDBbindK0I
6dq4RCSB PDB    PDBbindK0I

Entry Information
PDB ID5fpu
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein Namehuman KDM5B
Ligand NameK0I
EC.Number E.C.1.14.11
Resolution 2.24(Å)
Affinity (Kd/Ki/IC50)IC50=0.55uM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Nat.Chem.Biol. Vol. 12: pp. 539-548
Ligand Properties
Formula C22H23N5O2
Molecular Weight 389.450
Exact Mass 389.185
No. of atoms 52
No. of bonds 55
Polar Surface Area 91.24
LOGP Value 5.09      (Computed with XLOGP3)
3.17      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 1
No. of Hydrogen Bond Acceptors: 5
No. of Rotatable Bonds: 5
No. of Nitrogen and Oxygen Atoms: 7
No. of Rings: 4
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): Q9UGL1  
Entrez Gene IDNCBI Entrez Gene ID: 10765  
ASDInformation of known allosteric effects of PDB entries

 
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