Browse entries in the PDBbind-CN Database

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Related entries of code: 5ghv
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1xbbRCSB PDB    PDBbind291aa, >1XBB_1|Chain... at 96%
1xbcRCSB PDB    PDBbind291aa, >1XBC_1|Chain... at 96%
3emgRCSB PDB    PDBbind291aa, >3EMG_1|Chain... at 98%
3fqeRCSB PDB    PDBbind291aa, >3FQE_1|Chain... at 96%
3fqhRCSB PDB    PDBbind291aa, >3FQH_1|Chains... at 96%
3fqsRCSB PDB    PDBbind291aa, >3FQS_1|Chain... at 96%
3srvRCSB PDB    PDBbind277aa, >3SRV_2|Chain... at 99%
3vf8RCSB PDB    PDBbind299aa, >3VF8_1|Chain... at 97%
3vf9RCSB PDB    PDBbind299aa, >3VF9_1|Chain... at 97%
4dflRCSB PDB    PDBbind274aa, >4DFL_1|Chain... at 99%
4dfnRCSB PDB    PDBbind274aa, >4DFN_1|Chain... at 99%
4f4pRCSB PDB    PDBbind273aa, >4F4P_1|Chain... at 99%
4fl1RCSB PDB    PDBbind291aa, >4FL1_1|Chain... at 96%
4fl2RCSB PDB    PDBbind636aa, >4FL2_1|Chain... *
4fl3RCSB PDB    PDBbind635aa, >4FL3_1|Chain... at 99%
4fyoRCSB PDB    PDBbind291aa, >4FYO_1|Chain... at 96%
4fz6RCSB PDB    PDBbind291aa, >4FZ6_1|Chain... at 96%
4i0rRCSB PDB    PDBbind291aa, >4I0R_1|Chain... at 96%
4i0sRCSB PDB    PDBbind291aa, >4I0S_1|Chain... at 96%
4i0tRCSB PDB    PDBbind291aa, >4I0T_1|Chain... at 96%
4puzRCSB PDB    PDBbind291aa, >4PUZ_1|Chains... at 96%
4pv0RCSB PDB    PDBbind275aa, >4PV0_1|Chain... at 99%
4px6RCSB PDB    PDBbind291aa, >4PX6_1|Chain... at 95%
4rssRCSB PDB    PDBbind290aa, >4RSS_1|Chain... at 96%
4rx7RCSB PDB    PDBbind289aa, >4RX7_1|Chain... at 96%
4rx8RCSB PDB    PDBbind289aa, >4RX8_1|Chain... at 96%
4rx9RCSB PDB    PDBbind290aa, >4RX9_1|Chain... at 96%
4wnmRCSB PDB    PDBbind299aa, >4WNM_1|Chain... at 97%
4xg3RCSB PDB    PDBbind290aa, >4XG3_1|Chains... at 96%
4xg4RCSB PDB    PDBbind290aa, >4XG4_1|Chain... at 96%
4xg6RCSB PDB    PDBbind290aa, >4XG6_1|Chain... at 96%
4xg7RCSB PDB    PDBbind290aa, >4XG7_1|Chain... at 96%
4xg8RCSB PDB    PDBbind290aa, >4XG8_1|Chains... at 96%
4xg9RCSB PDB    PDBbind290aa, >4XG9_1|Chains... at 96%
5c26RCSB PDB    PDBbind299aa, >5C26_1|Chain... at 97%
5cxhRCSB PDB    PDBbind289aa, >5CXH_1|Chain... at 96%
5cxzRCSB PDB    PDBbind289aa, >5CXZ_1|Chain... at 96%
5cy3RCSB PDB    PDBbind291aa, >5CY3_1|Chain... at 95%
5lmaRCSB PDB    PDBbind277aa, >5LMA_1|Chain... at 99%
5lmbRCSB PDB    PDBbind277aa, >5LMB_1|Chains... at 99%
5t68RCSB PDB    PDBbind291aa, >5T68_1|Chains... at 96%
5tiuRCSB PDB    PDBbind291aa, >5TIU_1|Chain... at 96%
5tr6RCSB PDB    PDBbind289aa, >5TR6_1|Chain... at 96%
5tt7RCSB PDB    PDBbind289aa, >5TT7_1|Chain... at 96%
5y5tRCSB PDB    PDBbind293aa, >5Y5T_1|Chain... at 95%
5y5uRCSB PDB    PDBbind293aa, >5Y5U_1|Chains... at 95%
6hm6RCSB PDB    PDBbind276aa, >6HM6_1|Chain... at 100%
6hm7RCSB PDB    PDBbind276aa, >6HM7_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!
Entry Information
PDB ID5ghv
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameTyrosine-protein kinase SYK
Ligand NameX5G
EC.Number E.C.2.7.10.2
Resolution 2.8(Å)
Affinity (Kd/Ki/IC50)IC50=12.1nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Febs J. Vol. 283: pp. 3613-3625
Ligand Properties
Formula C27H38N6O2
Molecular Weight 478.630
Exact Mass 478.306
No. of atoms 73
No. of bonds 77
Polar Surface Area 81.08
LOGP Value 3.39      (Computed with XLOGP3)
3.96      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 4
No. of Hydrogen Bond Acceptors: 3
No. of Rotatable Bonds: 10
No. of Nitrogen and Oxygen Atoms: 8
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P43405  
Entrez Gene IDNCBI Entrez Gene ID: 6850  
ASDInformation of known allosteric effects of PDB entries
 
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