Browse entries in the PDBbind-CN Database

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Related entries of code: 5gid
Entries with 90% protein sequence similarity cutoff in PDBbind
PDB CodeCheck DatabaseProtein Sequence Similarity
1db1RCSB PDB    PDBbind259aa, >1DB1_1|Chain... at 90%
1ie9RCSB PDB    PDBbind259aa, >1IE9_1|Chain... at 90%
5gicRCSB PDB    PDBbind250aa, >5GIC_1|Chain... at 100%
Complexes with the same small molecule ligand
PDB CodeCheck DatabaseLigand Name
No complexes with the same small molecule ligand are found!

Entry Information
PDB ID5gid
Complex TypeProtein-Ligand
PDBbind Subsetgeneral set
Protein NameVitamin D3 receptor
Ligand NameVDP
EC.Number E.C.-.-.-.-
Resolution 2.15(Å)
Affinity (Kd/Ki/IC50)Kd=769.2nM
Release Year2016
Protein/NA SequenceCheck fasta file
Primary Reference (2016) Febs Lett. Vol. 590: pp. 3270-3279
Ligand Properties
Formula C37H53NO4
Molecular Weight 575.821
Exact Mass 575.397
No. of atoms 95
No. of bonds 99
Polar Surface Area 81
LOGP Value 6.18      (Computed with XLOGP3)
6.47      (Computed with Open Babel)
Drug likeness No. of Hydrogen Bond Donors: 3
No. of Hydrogen Bond Acceptors: 4
No. of Rotatable Bonds: 12
No. of Nitrogen and Oxygen Atoms: 5
No. of Rings: 5
Canonical SMILES
InChI String

Links to External Databases
RCSB PDBThe mother database
PDBsumEnhanced annotations on PDB entries
PubchemComprehensive collection of chemical and biological data
UniProtKB ACUniProt accession number (AC): P13053  Q15648  
Entrez Gene IDNCBI Entrez Gene ID: 24873  5469  
ASDInformation of known allosteric effects of PDB entries

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